RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 LINC00477Q96M19 166 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 SRRM4A7MD48 611 aaKnown RBP12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 GNLYP22749 145 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 PRTN3P24158 256 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 FXYD7P58549 80 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 Q8TCH9 128 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 GFRA4Q9GZZ7 299 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 NCOR1P1Q9H4R4 102 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 SELENOKQ9Y6D0 94 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 IGLV3-1P01715 115 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 PLNP26678 52 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 ZNF726P1Q15940 193 aa12.4□□□□□ -0.42
ARHGEF40-202ENST00000553709 WIPF3A6NGB9 483 aa12.4□□□□□ -0.43
ARHGEF40-202ENST00000553709 SAMD5Q5TGI4 173 aa12.4□□□□□ -0.43
ARHGEF40-202ENST00000553709 NDUFA4L2Q9NRX3 87 aa12.4□□□□□ -0.43
ARHGEF40-202ENST00000553709 COL6A6A6NMZ7 2263 aa12.39□□□□□ -0.43
ARHGEF40-202ENST00000553709 Q0VG73 95 aa12.39□□□□□ -0.43
ARHGEF40-202ENST00000553709 PDE6HQ13956 83 aa12.39□□□□□ -0.43
ARHGEF40-202ENST00000553709 C10orf91Q5T1B1 145 aa12.39□□□□□ -0.43
ARHGEF40-202ENST00000553709 DPH3P1Q9H4G8 78 aa12.39□□□□□ -0.43
ARHGEF40-202ENST00000553709 CFAP161Q6P656 301 aa12.39□□□□□ -0.43
ARHGEF40-202ENST00000553709 RBMY1BA6NDE4 496 aaKnown RBP12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 RBMY1EA6NEQ0 496 aaKnown RBP12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 B4DSR2 109 aa12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 RBMY1DP0C7P1 496 aaKnown RBP12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 RBMY1A1P0DJD3 496 aaKnown RBP12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 RBMY1CP0DJD4 496 aa12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 C3orf36Q3SXR2 165 aa12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 ZNF688P0C7X2 276 aa12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 AMN1Q8IY45 258 aa12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 USMG5Q96IX5 58 aa12.38□□□□□ -0.43
ARHGEF40-202ENST00000553709 TRAV8-2A0A0B4J237 113 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 IGHV4-39P01824 125 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 BCL6BQ8N143 479 aaPredicted RBP12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 FAM223BA6NKX1 122 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 C17orf58Q2M2W7 97 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 ZNF833PQ6ZTB9 187 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 FAM223AQ8IWN6 122 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 WNK2Q9Y3S1 2297 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 CACNA1HO95180 2353 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 HTN3P15516 51 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 MPV17L2Q567V2 206 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 NBASA2RRP1 2371 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 MUC22E2RYF6 1773 aaPredicted RBP12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 TRGV4A0A0C4DH28 118 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 PAX2Q02962 417 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 ZNF562Q6V9R5 426 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 MRPL52Q86TS9 123 aaKnown RBP12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 ZNF492Q9P255 531 aa12.37□□□□□ -0.43
ARHGEF40-202ENST00000553709 CYYR1Q96J86 154 aa12.36□□□□□ -0.43
ARHGEF40-202ENST00000553709 SIGMAR1Q99720 223 aa12.36□□□□□ -0.43
ARHGEF40-202ENST00000553709 IGHV3-64A0A075B6Q5 118 aa12.36□□□□□ -0.43
ARHGEF40-202ENST00000553709 SAA4P35542 130 aa12.36□□□□□ -0.43
ARHGEF40-202ENST00000553709 C11orf44Q8N8P7 122 aa12.36□□□□□ -0.43
ARHGEF40-202ENST00000553709 A0A087X0K7 114 aa12.36□□□□□ -0.43
ARHGEF40-202ENST00000553709 TMEM158Q8WZ71 300 aa12.36□□□□□ -0.43
ARHGEF40-202ENST00000553709 TRAV12-3A0A0B4J271 114 aa12.36□□□□□ -0.43
ARHGEF40-202ENST00000553709 ALPK3Q96L96 1907 aa12.36□□□□□ -0.43
ARHGEF40-202ENST00000553709 SMKR1H3BMG3 65 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 FCN3O75636 299 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 ARMS2P0C7Q2 107 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 ZNF876PQ49A33 203 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 DIDO1Q9BTC0 2240 aaKnown RBP12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 TMEM249Q2WGJ8 235 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 C14orf178Q8N769 122 aaPredicted RBP12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 RCHY1Q96PM5 261 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 BPESC1Q9GZL8 116 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 C15orf65H3BRN8 121 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 IL15RAQ13261 267 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 DUX4L9Q6RFH8 374 aaPredicted RBP12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 TMEM75Q8N9X5 138 aa12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 NAA38Q9BRA0 125 aaKnown RBP12.35□□□□□ -0.43
ARHGEF40-202ENST00000553709 FAM231BA6NCW3 169 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 VCYO14598 125 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 DOCK7Q96N67 2140 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 A0A1B0GUS0 222 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 GAGE13Q4V321 117 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 RHPN1-AS1Q9BWJ2 59 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 IGLV1-44P01699 117 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 HAPLN4Q86UW8 402 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 C18orf32Q8TCD1 76 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 YPEL3P61236 119 aaPredicted RBP12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 CT83Q5H943 113 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 IGFL3Q6UXB1 125 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 DOPEY2Q9Y3R5 2298 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 A8MWV9 139 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 TMEM238C9JI98 176 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 MALP21145 153 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 ERCC8Q13216 396 aa12.34□□□□□ -0.43
ARHGEF40-202ENST00000553709 POLR3KQ9Y2Y1 108 aaPredicted RBP12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 CSTL1Q9H114 145 aa12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 ERG28Q9UKR5 140 aa12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 GGTLC3B5MD39 225 aa12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 CFHR2P36980 270 aa12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 ZC2HC1BQ5TFG8 222 aa12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 ANAPC13Q9BS18 74 aa12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 MCRIP2Q9BUT9 160 aaKnown RBP12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 ADARB2-AS1A8MUL3 147 aa12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 A8MWP6 167 aa12.33□□□□□ -0.44
ARHGEF40-202ENST00000553709 CEACAM8P31997 349 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms