RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 NEU1Q99519 415 aa11.13□□□□□ -0.63
SHMT2-204ENST00000553324 SLC50A1Q9BRV3 221 aa11.13□□□□□ -0.63
SHMT2-204ENST00000553324 NPCDR1Q9BY65 106 aa11.13□□□□□ -0.63
SHMT2-204ENST00000553324 HRH4Q9H3N8 390 aa11.13□□□□□ -0.63
SHMT2-204ENST00000553324 KCNIP2Q9NS61 270 aa11.13□□□□□ -0.63
SHMT2-204ENST00000553324 PXMP4Q9Y6I8 212 aa11.13□□□□□ -0.63
SHMT2-204ENST00000553324 AGRNO00468 2067 aa11.13□□□□□ -0.63
SHMT2-204ENST00000553324 IGHV4-28A0A0C4DH34 117 aa11.12□□□□□ -0.63
SHMT2-204ENST00000553324 LCE6AA0A183 80 aa11.12□□□□□ -0.63
SHMT2-204ENST00000553324 A8MTW9 85 aa11.12□□□□□ -0.63
SHMT2-204ENST00000553324 F6UB75 175 aa11.12□□□□□ -0.63
SHMT2-204ENST00000553324 DEFB1P60022 68 aa11.12□□□□□ -0.63
SHMT2-204ENST00000553324 ZNF705AQ6ZN79 300 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-204ENST00000553324 LYSTQ99698 3801 aa11.12□□□□□ -0.63
SHMT2-204ENST00000553324 ALG5Q9Y673 324 aa11.12□□□□□ -0.63
SHMT2-204ENST00000553324 X6R8D5 127 aa11.12□□□□□ -0.63
SHMT2-204ENST00000553324 C17orf112F2Z3M2 114 aa11.11□□□□□ -0.63
SHMT2-204ENST00000553324 RPL12P30050 165 aaKnown RBP11.11□□□□□ -0.63
SHMT2-204ENST00000553324 CLINT1Q14677 625 aa11.11□□□□□ -0.63
SHMT2-204ENST00000553324 IGFL4Q6B9Z1 124 aa11.11□□□□□ -0.63
SHMT2-204ENST00000553324 RNF182Q8N6D2 247 aa11.11□□□□□ -0.63
SHMT2-204ENST00000553324 PHLDA1Q8WV24 401 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-204ENST00000553324 WDR61Q9GZS3 305 aaKnown RBP11.11□□□□□ -0.63
SHMT2-204ENST00000553324 MED28Q9H204 178 aa11.11□□□□□ -0.63
SHMT2-204ENST00000553324 ZNF331Q9NQX6 463 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-204ENST00000553324 GOLT1BQ9Y3E0 138 aa11.11□□□□□ -0.63
SHMT2-204ENST00000553324 DYNC2H1Q8NCM8 4307 aaKnown RBP11.11□□□□□ -0.63
SHMT2-204ENST00000553324 TMEM189A5PLL7 270 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 DEFB4AO15263 64 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 RBMY1A1P0DJD3 496 aaKnown RBP11.1□□□□□ -0.63
SHMT2-204ENST00000553324 RBMY1CP0DJD4 496 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 IGLC2P0DOY2 106 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 CNN1P51911 297 aaKnown RBP11.1□□□□□ -0.63
SHMT2-204ENST00000553324 RBMY1FQ15415 496 aaKnown RBP11.1□□□□□ -0.63
SHMT2-204ENST00000553324 THAP6Q8TBB0 222 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 ASB13Q8WXK3 278 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 ATP5SQ99766 215 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 SLC35B3Q9H1N7 401 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 PPP1R14DQ9NXH3 145 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 HSPB11Q9Y547 144 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 RYR3Q15413 4870 aa11.1□□□□□ -0.63
SHMT2-204ENST00000553324 SACSQ9NZJ4 4579 aa11.09□□□□□ -0.63
SHMT2-204ENST00000553324 ZNF705FA8MVS1 300 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-204ENST00000553324 C11orf94C9JXX5 98 aa11.09□□□□□ -0.63
SHMT2-204ENST00000553324 IFNA5P01569 189 aa11.09□□□□□ -0.63
SHMT2-204ENST00000553324 ZNF705DP0CH99 300 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-204ENST00000553324 ZNF705BP0CI00 300 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-204ENST00000553324 FXYD7P58549 80 aa11.09□□□□□ -0.63
SHMT2-204ENST00000553324 NANOS2P60321 138 aaKnown RBP11.09□□□□□ -0.63
SHMT2-204ENST00000553324 MORN5Q5VZ52 161 aa11.09□□□□□ -0.63
SHMT2-204ENST00000553324 OR8A1Q8NGG7 326 aa11.09□□□□□ -0.63
SHMT2-204ENST00000553324 SCGB1C1Q8TD33 95 aa11.09□□□□□ -0.63
SHMT2-204ENST00000553324 RPUSD4Q96CM3 377 aaKnown RBP11.09□□□□□ -0.63
SHMT2-204ENST00000553324 TMEM14CQ9P0S9 112 aa11.09□□□□□ -0.63
SHMT2-204ENST00000553324 TRAV5A0A0B4J249 113 aa11.08□□□□□ -0.64
SHMT2-204ENST00000553324 ZNF253O75346 499 aa11.08□□□□□ -0.64
SHMT2-204ENST00000553324 RHOBP62745 196 aa11.08□□□□□ -0.64
SHMT2-204ENST00000553324 AMTNQ6UX39 209 aa11.08□□□□□ -0.64
SHMT2-204ENST00000553324 OR11H7Q8NGC8 314 aa11.08□□□□□ -0.64
SHMT2-204ENST00000553324 SAT2Q96F10 170 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-204ENST00000553324 IGF2BP2-AS1Q96M15 143 aa11.08□□□□□ -0.64
SHMT2-204ENST00000553324 MBD2Q9UBB5 411 aa11.08□□□□□ -0.64
SHMT2-204ENST00000553324 RFNGQ9Y644 331 aa11.08□□□□□ -0.64
SHMT2-204ENST00000553324 TENM2Q9NT68 2774 aa11.07□□□□□ -0.64
SHMT2-204ENST00000553324 PLECQ15149 4684 aaKnown RBP11.07□□□□□ -0.64
SHMT2-204ENST00000553324 IGHV3OR16-12A0A075B7B8 117 aa11.07□□□□□ -0.64
SHMT2-204ENST00000553324 H3BQ15 152 aa11.07□□□□□ -0.64
SHMT2-204ENST00000553324 HIST1H1EP10412 219 aaKnown RBP11.07□□□□□ -0.64
SHMT2-204ENST00000553324 HIST1H1AQ02539 215 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-204ENST00000553324 PDE6HQ13956 83 aa11.07□□□□□ -0.64
SHMT2-204ENST00000553324 RGS21Q2M5E4 152 aa11.07□□□□□ -0.64
SHMT2-204ENST00000553324 OR10J6PQ8NGY7 276 aa11.07□□□□□ -0.64
SHMT2-204ENST00000553324 TMEM208Q9BTX3 173 aa11.07□□□□□ -0.64
SHMT2-204ENST00000553324 HBE1P02100 147 aa11.06□□□□□ -0.64
SHMT2-204ENST00000553324 SNRPCP09234 159 aaKnown RBP11.06□□□□□ -0.64
SHMT2-204ENST00000553324 HLA-DMBP28068 263 aa11.06□□□□□ -0.64
SHMT2-204ENST00000553324 TCTAP57738 103 aa11.06□□□□□ -0.64
SHMT2-204ENST00000553324 MRPL32Q9BYC8 188 aaKnown RBP11.06□□□□□ -0.64
SHMT2-204ENST00000553324 PARD6GQ9BYG4 376 aaPredicted RBP11.06□□□□□ -0.64
SHMT2-204ENST00000553324 ZNF586Q9NXT0 402 aa11.06□□□□□ -0.64
SHMT2-204ENST00000553324 PRELID1Q9Y255 219 aa11.06□□□□□ -0.64
SHMT2-204ENST00000553324 TIMM9Q9Y5J7 89 aa11.06□□□□□ -0.64
SHMT2-204ENST00000553324 TRBV19A0A075B6N1 114 aa11.05□□□□□ -0.64
SHMT2-204ENST00000553324 TEX48A0A1B0GUV7 120 aa11.05□□□□□ -0.64
SHMT2-204ENST00000553324 BOLA2-SMG1P6H3BVE0 249 aa11.05□□□□□ -0.64
SHMT2-204ENST00000553324 INSP01308 110 aa11.05□□□□□ -0.64
SHMT2-204ENST00000553324 SPART-AS1P0CW21 52 aa11.05□□□□□ -0.64
SHMT2-204ENST00000553324 FCN2Q15485 313 aa11.05□□□□□ -0.64
SHMT2-204ENST00000553324 SPINK13Q1W4C9 94 aa11.05□□□□□ -0.64
SHMT2-204ENST00000553324 C1orf158Q8N1D5 194 aa11.05□□□□□ -0.64
SHMT2-204ENST00000553324 C2CD4CQ8TF44 421 aa11.05□□□□□ -0.64
SHMT2-204ENST00000553324 MRPL53Q96EL3 112 aaKnown RBP11.05□□□□□ -0.64
SHMT2-204ENST00000553324 TSPOP30536 169 aa11.04□□□□□ -0.64
SHMT2-204ENST00000553324 CDKN1BP46527 198 aa11.04□□□□□ -0.64
SHMT2-204ENST00000553324 RRN3P1Q2M238 152 aa11.04□□□□□ -0.64
SHMT2-204ENST00000553324 GCSAMLQ5JQS6 135 aa11.04□□□□□ -0.64
SHMT2-204ENST00000553324 SMIM3Q9BZL3 60 aa11.04□□□□□ -0.64
SHMT2-204ENST00000553324 OR51M1Q9H341 326 aa11.04□□□□□ -0.64
SHMT2-204ENST00000553324 TRAV10A0A0B4J240 114 aa11.03□□□□□ -0.64
SHMT2-204ENST00000553324 H3BTX0 84 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms