RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SNAI2O43623 268 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 FCN3O75636 299 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 OR9G9P0C7N8 305 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 RAB9AP51151 201 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 AESQ08117 197 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 KIR3DS1Q14943 382 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 RTL8BQ17RB0 113 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 TMEM155Q4W5P6 130 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 PRAMEF5Q5TYX0 476 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 FAM90A1Q86YD7 464 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 OR4A16Q8NH70 328 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 HSPB8Q9UJY1 196 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 A0A1W2PPM0 123 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 FAM90A9PA6NNJ1 464 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 HIGD1CA8MV81 97 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 VDAC2P45880 294 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-216ENST00000552909 FOXA3P55318 350 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-216ENST00000552909 LINC01545Q5VT33 79 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 TRAT1Q6PIZ9 186 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 ABHD12Q8N2K0 398 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 TPRX1Q8N7U7 411 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 ZNRF1Q8ND25 227 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 HSD17B10Q99714 261 aaKnown RBP6.11□□□□□ -1.43
LIMA1-216ENST00000552909 NAA38Q9BRA0 125 aaKnown RBP6.11□□□□□ -1.43
LIMA1-216ENST00000552909 TMEM160Q9NX00 188 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 IDI2-AS1Q9NZ38 188 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 CTSZQ9UBR2 303 aa6.11□□□□□ -1.43
LIMA1-216ENST00000552909 TEX48A0A1B0GUV7 120 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 A0A1B0GXF2 115 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 LINC00473A8K010 186 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 TNFRSF13BO14836 293 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-216ENST00000552909 FABP2P12104 132 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 TAS2R45P59539 299 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 CKS1BP61024 79 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 HBBP68871 147 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 PRR20EP86478 221 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 PRR20CP86479 221 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 PRR20DP86480 221 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 PRR20BP86481 221 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 PRR20AP86496 221 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 FOXE3Q13461 319 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 ASPHD1Q5U4P2 390 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 DUX4L9Q6RFH8 374 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-216ENST00000552909 FA2HQ7L5A8 372 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 ZNF48Q96MX3 618 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-216ENST00000552909 CCL13Q99616 98 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 MCRIP2Q9BUT9 160 aaKnown RBP6.1□□□□□ -1.43
LIMA1-216ENST00000552909 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.1□□□□□ -1.43
LIMA1-216ENST00000552909 TMEM30CPA0ZSE6 113 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 TMEM189A5PLL7 270 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 GAGE12HA6NDE8 117 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 OOEPA6NGQ2 149 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 C22orf46C9J442 243 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 FSTL3O95633 263 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 MEF2CQ06413 473 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-216ENST00000552909 EDDM3AQ14507 147 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 CD300EQ496F6 205 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-216ENST00000552909 FAM216AQ8WUB2 273 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 RAB37Q96AX2 223 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 ZNF503Q96F45 646 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 NABP2Q9BQ15 211 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 RABAC1Q9UI14 185 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 ZNF257Q9Y2Q1 563 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 HILPDAQ9Y5L2 63 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 STAB1Q9NY15 2570 aa6.1□□□□□ -1.43
LIMA1-216ENST00000552909 C12orf77C9JDV5 145 aa6.09□□□□□ -1.43
LIMA1-216ENST00000552909 J3QR89 54 aa6.09□□□□□ -1.43
LIMA1-216ENST00000552909 ZNF207O43670 478 aaKnown RBP6.09□□□□□ -1.43
LIMA1-216ENST00000552909 LINC00205P59089 165 aa6.09□□□□□ -1.43
LIMA1-216ENST00000552909 SRSF2Q01130 221 aaKnown RBP6.09□□□□□ -1.43
LIMA1-216ENST00000552909 TEX36Q5VZQ5 186 aa6.09□□□□□ -1.43
LIMA1-216ENST00000552909 FAM53AQ6NSI3 398 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-216ENST00000552909 CFAP161Q6P656 301 aa6.09□□□□□ -1.43
LIMA1-216ENST00000552909 PPP1R35Q8TAP8 253 aa6.09□□□□□ -1.43
LIMA1-216ENST00000552909 COQ2Q96H96 371 aa6.09□□□□□ -1.43
LIMA1-216ENST00000552909 TSSC4Q9Y5U2 329 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-216ENST00000552909 TRAV26-1A0A087WT03 109 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 FGF6P10767 208 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 SRD5A1P18405 259 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 MC5RP33032 325 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 DUTP33316 252 aaKnown RBP6.08□□□□□ -1.44
LIMA1-216ENST00000552909 ERVK-16P61578 105 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 PRR31Q5SQ13 230 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 DPF1Q92782 380 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 ADTRPQ96IZ2 230 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 DCTN5Q9BTE1 182 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 C7orf69Q9H7B7 122 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 TENM1Q9UKZ4 2725 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 MGST3O14880 152 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 FCGR3BO75015 233 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 CRYBA4P53673 196 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 TCTEX1D4Q5JR98 221 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 ZNF788Q6ZQV5 615 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 FAM216BQ8N7L0 139 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 OR9G4Q8NGQ1 327 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 LINC00479Q96M42 142 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 GAFA1Q96PS6 74 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 C19orf24Q9BVV8 132 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 TCF19Q9Y242 345 aa6.08□□□□□ -1.44
LIMA1-216ENST00000552909 AMMECR1Q9Y4X0 333 aaPredicted RBP6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms