RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ACOT7LQ6ZUV0 252 aa5.37□□□□□ -1.55
NEK3-201ENST00000550331 TOMM5Q8N4H5 51 aa5.37□□□□□ -1.55
NEK3-201ENST00000550331 SYT8Q8NBV8 401 aa5.37□□□□□ -1.55
NEK3-201ENST00000550331 MCFD2Q8NI22 146 aa5.37□□□□□ -1.55
NEK3-201ENST00000550331 SHANK2-AS3Q9BTD1 123 aa5.37□□□□□ -1.55
NEK3-201ENST00000550331 DMBT1Q9UGM3 2413 aaPredicted RBP5.36□□□□□ -1.55
NEK3-201ENST00000550331 ZNF705GA8MUZ8 300 aaPredicted RBP5.36□□□□□ -1.55
NEK3-201ENST00000550331 H3BMQ9 156 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 H3BRN7 92 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 BOLA2-SMG1P6H3BVE0 249 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 M0R2Z0 102 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 WRBO00258 174 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 CDK2AP2O75956 126 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 SFT2D2O95562 160 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 RPL7P18124 248 aaKnown RBP5.36□□□□□ -1.55
NEK3-201ENST00000550331 GATA2P23769 480 aaPredicted RBP5.36□□□□□ -1.55
NEK3-201ENST00000550331 PLP1P60201 277 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 RAP2BP61225 183 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 PPP1R1AQ13522 171 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 CYP2G1PQ6ZSU1 146 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 TMEM144Q7Z5S9 345 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 S100A7AQ86SG5 101 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 TMEM256Q8N2U0 113 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 ATG101Q9BSB4 218 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 SLC25A39Q9BZJ4 359 aaPredicted RBP5.36□□□□□ -1.55
NEK3-201ENST00000550331 RNF24Q9Y225 148 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 HIGD1AQ9Y241 93 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 STRAPQ9Y3F4 350 aaKnown RBP5.36□□□□□ -1.55
NEK3-201ENST00000550331 AGRNO00468 2067 aa5.36□□□□□ -1.55
NEK3-201ENST00000550331 A0A087X0K7 114 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 PLAC8L1A1L4L8 177 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 H3BP45 60 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 H3BS24 57 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 HYPMO75409 117 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 IL5P05113 134 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 ATP5G1P05496 136 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 HOXB5P09067 269 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 ATP5G3P48201 142 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 TAS2R60P59551 318 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 UBE2MP61081 183 aaKnown RBP5.35□□□□□ -1.55
NEK3-201ENST00000550331 SELENOTP62341 195 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 PYDC2Q56P42 97 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 IGFL4Q6B9Z1 124 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 BAP18Q8IXM2 172 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 RNF182Q8N6D2 247 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 ZNF738Q8NE65 137 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 ZNRF2Q8NHG8 242 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 C16orf74Q96GX8 76 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 V9GYH0 126 aa5.35□□□□□ -1.55
NEK3-201ENST00000550331 TRAV12-2A0A075B6T6 113 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 NBDYA0A0U1RRE5 68 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 SMCO3A2RU48 225 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 CBY3A6NI87 242 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 PMS2P5A8MQ11 134 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 C16orf90A8MZG2 172 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 FNDC10F2Z333 226 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 F5H768 121 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 K7EPK0 472 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 PRM2P04554 102 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 LINC00869P0C866 280 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 DEFB130BP0DP73 79 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 DEFB130AP0DP74 79 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 CXCL2P19875 107 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 CXCL3P19876 107 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 AZU1P20160 251 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 CCL18P55774 89 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 POLR2GP62487 172 aaKnown RBP eCLIP5.34□□□□□ -1.55
NEK3-201ENST00000550331 FGL1Q08830 312 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 ZNF493Q6ZR52 646 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 Q8N1X5 172 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 OR8A1Q8NGG7 326 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 LINC01587Q99440 93 aa5.34□□□□□ -1.55
NEK3-201ENST00000550331 H7BYZ3 331 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 ADAP1O75689 374 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 NUDT3O95989 172 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 SLPIP03973 132 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 OR5G3P0C626 314 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 S100A5P33763 92 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 CDKN1BP46527 198 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 RHOBP62745 196 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 DLK1P80370 383 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 HIST1H1AQ02539 215 aaPredicted RBP5.33□□□□□ -1.56
NEK3-201ENST00000550331 PSG3Q16557 428 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 PXDC1Q5TGL8 231 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 TMEM14EPQ6UXP3 125 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 C6orf223Q8N319 242 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 LRRC20Q8TCA0 184 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 RNASE8Q8TDE3 154 aaKnown RBP5.33□□□□□ -1.56
NEK3-201ENST00000550331 TMEM263Q8WUH6 116 aaKnown RBP5.33□□□□□ -1.56
NEK3-201ENST00000550331 SMIM8Q96KF7 97 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 UHRF2Q96PU4 802 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 C20orf144Q9BQM9 153 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 SCRT2Q9NQ03 307 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 PPP1R14DQ9NXH3 145 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 PSENENQ9NZ42 101 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 TIMM8BQ9Y5J9 83 aaPredicted RBP5.33□□□□□ -1.56
NEK3-201ENST00000550331 NACAE9PAV3 2078 aa5.33□□□□□ -1.56
NEK3-201ENST00000550331 C9orf170A2RU37 121 aa5.32□□□□□ -1.56
NEK3-201ENST00000550331 NAP1L6A6NFF2 107 aa5.32□□□□□ -1.56
NEK3-201ENST00000550331 MRPS12O15235 138 aaKnown RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms