RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 FAM57AQ8TBR7 257 aa11.71□□□□□ -0.53
HOXC11-202ENST00000546378 TMEM133Q9H2Q1 129 aa11.71□□□□□ -0.53
HOXC11-202ENST00000546378 OCIAD2Q56VL3 154 aa11.71□□□□□ -0.54
HOXC11-202ENST00000546378 ARL6IP6Q8N6S5 226 aa11.71□□□□□ -0.54
HOXC11-202ENST00000546378 ADTRPQ96IZ2 230 aa11.71□□□□□ -0.54
HOXC11-202ENST00000546378 GAL3ST2Q9H3Q3 398 aa11.71□□□□□ -0.54
HOXC11-202ENST00000546378 PLSCR4Q9NRQ2 329 aa11.71□□□□□ -0.54
HOXC11-202ENST00000546378 EPG5Q9HCE0 2579 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 PPIAL4EA0A075B759 164 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 PPIAL4FP0DN26 164 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 GLRXP35754 106 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 LRRC10Q5BKY1 277 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 GNG7O60262 68 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 CD40P25942 277 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 C2orf83Q53S99 150 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 RBPMS2Q6ZRY4 209 aaKnown RBP11.7□□□□□ -0.54
HOXC11-202ENST00000546378 RPEQ96AT9 228 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 NDUFA4L2Q9NRX3 87 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 UFC1Q9Y3C8 167 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 GATA1P15976 413 aaPredicted RBP11.7□□□□□ -0.54
HOXC11-202ENST00000546378 SLC25A48Q6ZT89 311 aaKnown RBP11.7□□□□□ -0.54
HOXC11-202ENST00000546378 TMEM186Q96B77 213 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 MSRB1Q9NZV6 116 aa11.7□□□□□ -0.54
HOXC11-202ENST00000546378 FAM120AOSQ5T036 256 aa11.69□□□□□ -0.54
HOXC11-202ENST00000546378 C1RLQ9NZP8 487 aa11.69□□□□□ -0.54
HOXC11-202ENST00000546378 IGKV1D-37A0A075B6S9 117 aa11.69□□□□□ -0.54
HOXC11-202ENST00000546378 MBD3L4A6NDZ8 208 aaPredicted RBP11.69□□□□□ -0.54
HOXC11-202ENST00000546378 MBD3L3A6NE82 208 aaPredicted RBP11.69□□□□□ -0.54
HOXC11-202ENST00000546378 MBD3L5A6NJ08 208 aaPredicted RBP11.69□□□□□ -0.54
HOXC11-202ENST00000546378 MBD3L2Q8NHZ7 208 aaPredicted RBP11.69□□□□□ -0.54
HOXC11-202ENST00000546378 KLRD1Q13241 179 aa11.68□□□□□ -0.54
HOXC11-202ENST00000546378 HIF1ANQ9NWT6 349 aa11.68□□□□□ -0.54
HOXC11-202ENST00000546378 A0A0G2JNJ9 132 aa11.68□□□□□ -0.54
HOXC11-202ENST00000546378 A0A1B0GUT8 65 aa11.68□□□□□ -0.54
HOXC11-202ENST00000546378 FAM90A27PA6NNH2 459 aa11.68□□□□□ -0.54
HOXC11-202ENST00000546378 CKS2P33552 79 aa11.68□□□□□ -0.54
HOXC11-202ENST00000546378 Q9UFV3 132 aa11.68□□□□□ -0.54
HOXC11-202ENST00000546378 USP9XQ93008 2570 aaPredicted RBP11.68□□□□□ -0.54
HOXC11-202ENST00000546378 GAS8-AS1O95177 125 aa11.68□□□□□ -0.54
HOXC11-202ENST00000546378 ESDP10768 282 aa11.68□□□□□ -0.54
HOXC11-202ENST00000546378 TRAV9-1A0A075B6T8 112 aa11.67□□□□□ -0.54
HOXC11-202ENST00000546378 LYZL1Q6UWQ5 148 aa11.67□□□□□ -0.54
HOXC11-202ENST00000546378 LINC00527Q9UJ94 153 aa11.67□□□□□ -0.54
HOXC11-202ENST00000546378 IGHV2-70DA0A0C4DH43 119 aa11.67□□□□□ -0.54
HOXC11-202ENST00000546378 AARDQ4LEZ3 155 aa11.67□□□□□ -0.54
HOXC11-202ENST00000546378 LINC01560Q8TB33 94 aa11.67□□□□□ -0.54
HOXC11-202ENST00000546378 DKK2Q9UBU2 259 aa11.67□□□□□ -0.54
HOXC11-202ENST00000546378 RABAC1Q9UI14 185 aa11.67□□□□□ -0.54
HOXC11-202ENST00000546378 LIPFP07098 398 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 MEF2CQ06413 473 aaPredicted RBP11.66□□□□□ -0.54
HOXC11-202ENST00000546378 ZNF788Q6ZQV5 615 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 MRPS16Q9Y3D3 137 aaKnown RBP11.66□□□□□ -0.54
HOXC11-202ENST00000546378 RBPJQ06330 500 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 C12orf54Q6X4T0 127 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 MRPL32Q9BYC8 188 aaKnown RBP11.66□□□□□ -0.54
HOXC11-202ENST00000546378 TMEM160Q9NX00 188 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 AGRNO00468 2067 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 CSN1S1P47710 185 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 TMEM108Q6UXF1 575 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 GTSCR1Q86UQ5 136 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 OSR1Q8TAX0 266 aaPredicted RBP11.66□□□□□ -0.54
HOXC11-202ENST00000546378 SLC25A39Q9BZJ4 359 aaPredicted RBP11.66□□□□□ -0.54
HOXC11-202ENST00000546378 CTSZQ9UBR2 303 aa11.66□□□□□ -0.54
HOXC11-202ENST00000546378 SAPCD1Q5SSQ6 148 aa11.65□□□□□ -0.54
HOXC11-202ENST00000546378 PRELID3AQ96N28 172 aa11.65□□□□□ -0.54
HOXC11-202ENST00000546378 GTSF1LQ9H1H1 148 aa11.65□□□□□ -0.54
HOXC11-202ENST00000546378 HSPB8Q9UJY1 196 aa11.65□□□□□ -0.54
HOXC11-202ENST00000546378 HIVEP3Q5T1R4 2406 aa11.65□□□□□ -0.54
HOXC11-202ENST00000546378 MRPL27Q9P0M9 148 aaKnown RBP11.65□□□□□ -0.54
HOXC11-202ENST00000546378 TRAV26-2A0A0B4J265 109 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 RHOGP84095 191 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 TMEM97Q5BJF2 176 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 AMTNQ6UX39 209 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 RAB9BQ9NP90 201 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 CCDC168Q8NDH2 2452 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 IGHV3OR16-10A0A075B7F0 116 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 SMAGPQ0VAQ4 97 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 ERCC8Q13216 396 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 COX19Q49B96 90 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 OR1N2Q8NGR9 330 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 NHP2Q9NX24 153 aaKnown RBP11.64□□□□□ -0.55
HOXC11-202ENST00000546378 LY96Q9Y6Y9 160 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 UCNP55089 124 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 RPL11P62913 178 aaKnown RBP11.64□□□□□ -0.55
HOXC11-202ENST00000546378 KIR3DS1Q14943 382 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 RNF182Q8N6D2 247 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 OR10AG1Q8NH19 301 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 PSG8Q9UQ74 426 aa11.64□□□□□ -0.55
HOXC11-202ENST00000546378 TMEM189A5PLL7 270 aa11.63□□□□□ -0.55
HOXC11-202ENST00000546378 C16orf97H3BN30 126 aa11.63□□□□□ -0.55
HOXC11-202ENST00000546378 CCL21O00585 134 aa11.63□□□□□ -0.55
HOXC11-202ENST00000546378 Q86TA4 180 aa11.63□□□□□ -0.55
HOXC11-202ENST00000546378 FCN3O75636 299 aa11.63□□□□□ -0.55
HOXC11-202ENST00000546378 SPCS1Q9Y6A9 102 aa11.63□□□□□ -0.55
HOXC11-202ENST00000546378 LINC00312Q9Y6C7 94 aa11.63□□□□□ -0.55
HOXC11-202ENST00000546378 MYO18BQ8IUG5 2567 aa11.63□□□□□ -0.55
HOXC11-202ENST00000546378 J3QW42 95 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 K7ERU9 68 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 PLP1P60201 277 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 ECSCRQ19T08 205 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms