RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 BPIFA4PQ86YQ2 179 aa8.62□□□□□ -1.03
YBX3-217ENST00000546164 ZNF709Q8N972 641 aa8.62□□□□□ -1.03
YBX3-217ENST00000546164 Q8NAQ8 132 aa8.62□□□□□ -1.03
YBX3-217ENST00000546164 NPCDR1Q9BY65 106 aa8.62□□□□□ -1.03
YBX3-217ENST00000546164 SLC39A9Q9NUM3 307 aa8.62□□□□□ -1.03
YBX3-217ENST00000546164 PXMP4Q9Y6I8 212 aa8.62□□□□□ -1.03
YBX3-217ENST00000546164 X6R8D5 127 aa8.62□□□□□ -1.03
YBX3-217ENST00000546164 F6UB75 175 aa8.61□□□□□ -1.03
YBX3-217ENST00000546164 MIFP14174 115 aa8.61□□□□□ -1.03
YBX3-217ENST00000546164 CXCL3P19876 107 aa8.61□□□□□ -1.03
YBX3-217ENST00000546164 FGL1Q08830 312 aa8.61□□□□□ -1.03
YBX3-217ENST00000546164 FAM78BQ5VT40 261 aa8.61□□□□□ -1.03
YBX3-217ENST00000546164 MORN5Q5VZ52 161 aa8.61□□□□□ -1.03
YBX3-217ENST00000546164 LCN15Q6UWW0 184 aa8.61□□□□□ -1.03
YBX3-217ENST00000546164 CLEC5AQ9NY25 188 aa8.61□□□□□ -1.03
YBX3-217ENST00000546164 XCL2Q9UBD3 114 aa8.61□□□□□ -1.03
YBX3-217ENST00000546164 IGHV4-28A0A0C4DH34 117 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 IGLC2P0DOY2 106 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 PSG9Q00887 426 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 CLINT1Q14677 625 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 AMTNQ6UX39 209 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 ZNF705AQ6ZN79 300 aaPredicted RBP8.6□□□□□ -1.03
YBX3-217ENST00000546164 OR4B1Q8NGF8 309 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 SLC50A1Q9BRV3 221 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 WDR61Q9GZS3 305 aaKnown RBP8.6□□□□□ -1.03
YBX3-217ENST00000546164 HRH4Q9H3N8 390 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 ZNF331Q9NQX6 463 aaPredicted RBP8.6□□□□□ -1.03
YBX3-217ENST00000546164 KCNIP2Q9NS61 270 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 MBD2Q9UBB5 411 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 HSPB11Q9Y547 144 aa8.6□□□□□ -1.03
YBX3-217ENST00000546164 LCE6AA0A183 80 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 NUPR2A6NF83 97 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 DUSP14O95147 198 aaKnown RBP8.59□□□□□ -1.03
YBX3-217ENST00000546164 IGKV3-20P01619 116 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 RPL12P30050 165 aaKnown RBP8.59□□□□□ -1.03
YBX3-217ENST00000546164 PSG3Q16557 428 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 IGFL4Q6B9Z1 124 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 RNF182Q8N6D2 247 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 OR11H7Q8NGC8 314 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 THAP6Q8TBB0 222 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 NEU1Q99519 415 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 ATP5SQ99766 215 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 MFFQ9GZY8 342 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 SLC35B3Q9H1N7 401 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 MED28Q9H204 178 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 TMEM14CQ9P0S9 112 aa8.59□□□□□ -1.03
YBX3-217ENST00000546164 CXorf65A6NEN9 183 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 ZNF705FA8MVS1 300 aaPredicted RBP8.58□□□□□ -1.04
YBX3-217ENST00000546164 H3BQ15 152 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 AMBPP02760 352 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 ZNF705DP0CH99 300 aaPredicted RBP8.58□□□□□ -1.04
YBX3-217ENST00000546164 ZNF705BP0CI00 300 aaPredicted RBP8.58□□□□□ -1.04
YBX3-217ENST00000546164 RBMY1A1P0DJD3 496 aaKnown RBP8.58□□□□□ -1.04
YBX3-217ENST00000546164 RBMY1CP0DJD4 496 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 CNN1P51911 297 aaKnown RBP8.58□□□□□ -1.04
YBX3-217ENST00000546164 PMS2P11Q13670 270 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 RBMY1FQ15415 496 aaKnown RBP8.58□□□□□ -1.04
YBX3-217ENST00000546164 FCN2Q15485 313 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 GUK1Q16774 197 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 ZNF738Q8NE65 137 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 C11orf45Q8TAV5 145 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 LRRC20Q8TCA0 184 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 ASB13Q8WXK3 278 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 SAT2Q96F10 170 aaPredicted RBP8.58□□□□□ -1.04
YBX3-217ENST00000546164 HYDINQ4G0P3 5121 aa8.58□□□□□ -1.04
YBX3-217ENST00000546164 VPS13DQ5THJ4 4388 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 TRAV5A0A0B4J249 113 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 SMIM9A6NGZ8 99 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 DEFB4AO15263 64 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 ZNF253O75346 499 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 HLA-DMBP28068 263 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 OXA1LQ15070 435 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 RGS21Q2M5E4 152 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 GCSAMLQ5JQS6 135 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 CEMP1Q6PRD7 247 aaPredicted RBP8.57□□□□□ -1.04
YBX3-217ENST00000546164 OR8A1Q8NGG7 326 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 RPUSD4Q96CM3 377 aaKnown RBP8.57□□□□□ -1.04
YBX3-217ENST00000546164 IGF2BP2-AS1Q96M15 143 aa8.57□□□□□ -1.04
YBX3-217ENST00000546164 PARD6GQ9BYG4 376 aaPredicted RBP8.57□□□□□ -1.04
YBX3-217ENST00000546164 C17orf112F2Z3M2 114 aa8.56□□□□□ -1.04
YBX3-217ENST00000546164 SLC17A3O00476 420 aa8.56□□□□□ -1.04
YBX3-217ENST00000546164 GIPP09681 153 aaPredicted RBP8.56□□□□□ -1.04
YBX3-217ENST00000546164 FXYD7P58549 80 aa8.56□□□□□ -1.04
YBX3-217ENST00000546164 C1orf158Q8N1D5 194 aa8.56□□□□□ -1.04
YBX3-217ENST00000546164 LINC00528Q8N1L1 170 aa8.56□□□□□ -1.04
YBX3-217ENST00000546164 PHLDA1Q8WV24 401 aaPredicted RBP8.56□□□□□ -1.04
YBX3-217ENST00000546164 ZNF586Q9NXT0 402 aa8.56□□□□□ -1.04
YBX3-217ENST00000546164 GOLT1BQ9Y3E0 138 aa8.56□□□□□ -1.04
YBX3-217ENST00000546164 TRBV19A0A075B6N1 114 aa8.55□□□□□ -1.04
YBX3-217ENST00000546164 BOLA2-SMG1P6H3BVE0 249 aa8.55□□□□□ -1.04
YBX3-217ENST00000546164 JTBO76095 146 aa8.55□□□□□ -1.04
YBX3-217ENST00000546164 IFNA5P01569 189 aa8.55□□□□□ -1.04
YBX3-217ENST00000546164 SNRPCP09234 159 aaKnown RBP8.55□□□□□ -1.04
YBX3-217ENST00000546164 HIST1H1EP10412 219 aaKnown RBP8.55□□□□□ -1.04
YBX3-217ENST00000546164 NANOS2P60321 138 aaKnown RBP8.55□□□□□ -1.04
YBX3-217ENST00000546164 HIST1H1AQ02539 215 aaPredicted RBP8.55□□□□□ -1.04
YBX3-217ENST00000546164 PDE6HQ13956 83 aa8.55□□□□□ -1.04
YBX3-217ENST00000546164 FAM167A-AS1Q96KT0 104 aa8.55□□□□□ -1.04
YBX3-217ENST00000546164 MRPL32Q9BYC8 188 aaKnown RBP8.55□□□□□ -1.04
YBX3-217ENST00000546164 SMIM3Q9BZL3 60 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms