RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 MUC21Q5SSG8 566 aa12.45□□□□□ -0.42
LDLR-204ENST00000545707 CHCHD1Q96BP2 118 aaKnown RBP12.45□□□□□ -0.42
LDLR-204ENST00000545707 RNF125Q96EQ8 232 aa12.45□□□□□ -0.42
LDLR-204ENST00000545707 NDFIP1Q9BT67 221 aa12.45□□□□□ -0.42
LDLR-204ENST00000545707 H3BRN7 92 aa12.45□□□□□ -0.42
LDLR-204ENST00000545707 A0A1B0GUT8 65 aa12.44□□□□□ -0.42
LDLR-204ENST00000545707 PTPRQQ9UMZ3 2332 aa12.44□□□□□ -0.42
LDLR-204ENST00000545707 FAM231BA6NCW3 169 aa12.43□□□□□ -0.42
LDLR-204ENST00000545707 CCL25O15444 150 aa12.43□□□□□ -0.42
LDLR-204ENST00000545707 CRXO43186 299 aaPredicted RBP12.43□□□□□ -0.42
LDLR-204ENST00000545707 C16orf54Q6UWD8 224 aa12.43□□□□□ -0.42
LDLR-204ENST00000545707 ZNF414Q96IQ9 312 aa12.43□□□□□ -0.42
LDLR-204ENST00000545707 ATRXP46100 2492 aa12.43□□□□□ -0.42
LDLR-204ENST00000545707 NBR2O15453 112 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 LIPFP07098 398 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 CDSNQ15517 529 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 PSG3Q16557 428 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 MPV17L2Q567V2 206 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 FAM162BQ5T6X4 162 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 NEU4Q8WWR8 484 aaPredicted RBP12.42□□□□□ -0.42
LDLR-204ENST00000545707 IGHV3OR16-8A0A075B7F1 116 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 MRPS12O15235 138 aaKnown RBP12.42□□□□□ -0.42
LDLR-204ENST00000545707 FAM106CPP0CH98 169 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 FAM106AQ4KMX7 169 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 IGFL4Q6B9Z1 124 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 DPM3Q9P2X0 92 aa12.42□□□□□ -0.42
LDLR-204ENST00000545707 C20orf202A1L168 122 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 GNG7O60262 68 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 FOXC1Q12948 553 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 TMEM75Q8N9X5 138 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 CFHR4Q92496 578 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 CACNA1BQ00975 2339 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 PTTG1IPP53801 180 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 VKORC1Q9BQB6 163 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 MAP1LC3CQ9BXW4 147 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 WNK2Q9Y3S1 2297 aa12.41□□□□□ -0.42
LDLR-204ENST00000545707 IGHV3-35A0A0C4DH35 117 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 LOC389332A0A1B0GUA5 103 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 SERTM2A0A1B0GWG4 89 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 FANCD2OSQ96PS1 177 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 COX11Q9Y6N1 276 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 TMEM213A2RRL7 107 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 FXYD7P58549 80 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 NDPQ00604 133 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 LOXL1Q08397 574 aaPredicted RBP12.4□□□□□ -0.42
LDLR-204ENST00000545707 RIGQ13278 110 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 FOXE3Q13461 319 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 RNF5Q99942 180 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 IGF2RP11717 2491 aa12.4□□□□□ -0.42
LDLR-204ENST00000545707 IGKV2-40A0A087WW87 121 aaPredicted RBP12.39□□□□□ -0.43
LDLR-204ENST00000545707 NCBP2LA6PVI3 153 aaKnown RBP12.39□□□□□ -0.43
LDLR-204ENST00000545707 K7EQM0 130 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 NCR2O95944 276 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 IGKV2D-40P01614 121 aaPredicted RBP12.39□□□□□ -0.43
LDLR-204ENST00000545707 DYNAPQ8N1N2 210 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 LY6G5BQ8NDX9 201 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 ORAOV1Q8WV07 137 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 C1RLQ9NZP8 487 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 WI2-2373I1.2A0A1W2PRP0 233 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 SNAI2O43623 268 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 NUDT3O95989 172 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 OR5AL1P0C617 328 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 PRSS3P2Q8NHM4 247 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 TMEM191AQ9H0A3 160 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 ST20Q9HBF5 79 aa12.39□□□□□ -0.43
LDLR-204ENST00000545707 F8W735 103 aaPredicted RBP12.38□□□□□ -0.43
LDLR-204ENST00000545707 IFI27P40305 119 aaPredicted RBP12.38□□□□□ -0.43
LDLR-204ENST00000545707 LYZL1Q6UWQ5 148 aa12.38□□□□□ -0.43
LDLR-204ENST00000545707 AP5S1Q9NUS5 200 aa12.38□□□□□ -0.43
LDLR-204ENST00000545707 OR2T8A6NH00 312 aa12.38□□□□□ -0.43
LDLR-204ENST00000545707 C5orf64Q2M2E5 130 aa12.38□□□□□ -0.43
LDLR-204ENST00000545707 ZNF738Q8NE65 137 aa12.38□□□□□ -0.43
LDLR-204ENST00000545707 ZFHX3Q15911 3703 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 TRBV6-1A0A0K0K1D8 114 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 HLA-DMBP28068 263 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 SLC25A34Q6PIV7 304 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 Q8TAT8 98 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 HSBP1L1C9JCN9 74 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 CT45A10P0DMU9 189 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 TCTAP57738 103 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 AMN1Q8IY45 258 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 OR11H6Q8NGC7 330 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 SRSF8Q9BRL6 282 aaKnown RBP12.37□□□□□ -0.43
LDLR-204ENST00000545707 AAMDCQ9H7C9 122 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 RNF24Q9Y225 148 aa12.37□□□□□ -0.43
LDLR-204ENST00000545707 IGLV11-55A0A075B6I3 123 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 D6R8Y8 96 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 NDUFA3O95167 84 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 MFAP4P55083 255 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 PET117Q6UWS5 81 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 FA2HQ7L5A8 372 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 LYPD1Q8N2G4 141 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 NPBQ8NG41 125 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 HSPB8Q9UJY1 196 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 A0A087X0K7 114 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 SH2D1AO60880 128 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 ZNF747Q9BV97 191 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 SCRT2Q9NQ03 307 aa12.36□□□□□ -0.43
LDLR-204ENST00000545707 LOC105371242A0A075B767 164 aa12.35□□□□□ -0.43
LDLR-204ENST00000545707 TMEM189A5PLL7 270 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms