RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 INS-IGF2F8WCM5 200 aa11.87□□□□□ -0.51
USP28-214ENST00000545540 NDUFS7O75251 213 aa11.87□□□□□ -0.51
USP28-214ENST00000545540 LOXL1Q08397 574 aaPredicted RBP11.87□□□□□ -0.51
USP28-214ENST00000545540 FMC1Q96HJ9 113 aa11.87□□□□□ -0.51
USP28-214ENST00000545540 IGKV2-40A0A087WW87 121 aaPredicted RBP11.87□□□□□ -0.51
USP28-214ENST00000545540 TMEM213A2RRL7 107 aa11.87□□□□□ -0.51
USP28-214ENST00000545540 IGKV2D-40P01614 121 aaPredicted RBP11.87□□□□□ -0.51
USP28-214ENST00000545540 NGBQ9NPG2 151 aa11.87□□□□□ -0.51
USP28-214ENST00000545540 TMEM75Q8N9X5 138 aa11.86□□□□□ -0.51
USP28-214ENST00000545540 IGHV3-49A0A0A0MS15 119 aa11.86□□□□□ -0.51
USP28-214ENST00000545540 SMKR1H3BMG3 65 aa11.86□□□□□ -0.51
USP28-214ENST00000545540 CCL25O15444 150 aa11.86□□□□□ -0.51
USP28-214ENST00000545540 KLHDC1Q8N7A1 406 aa11.86□□□□□ -0.51
USP28-214ENST00000545540 LOC102724200A0A096LPH7 203 aaPredicted RBP11.86□□□□□ -0.51
USP28-214ENST00000545540 OR2T8A6NH00 312 aa11.86□□□□□ -0.51
USP28-214ENST00000545540 OR2J3O76001 311 aa11.86□□□□□ -0.51
USP28-214ENST00000545540 KAAG1Q9UBP8 84 aa11.86□□□□□ -0.51
USP28-214ENST00000545540 CCL21O00585 134 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 PTTG1IPP53801 180 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 DYNAPQ8N1N2 210 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 SCNM1Q9BWG6 230 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 SYS1-DBNDD2H3BUS1 97 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 GNG7O60262 68 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 NCR2O95944 276 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 APOHP02749 345 aaPredicted RBP11.85□□□□□ -0.51
USP28-214ENST00000545540 KLF5Q13887 457 aaPredicted RBP11.85□□□□□ -0.51
USP28-214ENST00000545540 ZNF491Q8N8L2 437 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 JKAMPQ9P055 326 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 ZFP30Q9Y2G7 519 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 NDPQ00604 133 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 RNF125Q96EQ8 232 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 PSG8Q9UQ74 426 aa11.85□□□□□ -0.51
USP28-214ENST00000545540 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.84□□□□□ -0.51
USP28-214ENST00000545540 NUDT3O95989 172 aa11.84□□□□□ -0.51
USP28-214ENST00000545540 HLA-DRB1P01911 266 aa11.84□□□□□ -0.51
USP28-214ENST00000545540 PPIFP30405 207 aaKnown RBP11.84□□□□□ -0.51
USP28-214ENST00000545540 OTORQ9NRC9 128 aa11.84□□□□□ -0.51
USP28-214ENST00000545540 CSPG4Q6UVK1 2322 aa11.84□□□□□ -0.51
USP28-214ENST00000545540 TRBV19A0A075B6N1 114 aa11.84□□□□□ -0.51
USP28-214ENST00000545540 A0A087X0K7 114 aa11.84□□□□□ -0.51
USP28-214ENST00000545540 CBY3A6NI87 242 aa11.84□□□□□ -0.51
USP28-214ENST00000545540 OR4F17Q8NGA8 305 aa11.84□□□□□ -0.51
USP28-214ENST00000545540 CHRDL1Q9BU40 450 aa11.84□□□□□ -0.51
USP28-214ENST00000545540 B9A039 149 aa11.83□□□□□ -0.51
USP28-214ENST00000545540 TMEM11P17152 192 aa11.83□□□□□ -0.51
USP28-214ENST00000545540 IGF2-ASQ6U949 168 aa11.83□□□□□ -0.51
USP28-214ENST00000545540 BPIFA4PQ86YQ2 179 aa11.83□□□□□ -0.51
USP28-214ENST00000545540 OR8A1Q8NGG7 326 aa11.83□□□□□ -0.51
USP28-214ENST00000545540 NPIPB5A8MRT5 1133 aa11.83□□□□□ -0.52
USP28-214ENST00000545540 IFI27P40305 119 aaPredicted RBP11.83□□□□□ -0.52
USP28-214ENST00000545540 FAM71F2Q6NXP2 309 aa11.83□□□□□ -0.52
USP28-214ENST00000545540 SIGLEC15Q6ZMC9 328 aa11.83□□□□□ -0.52
USP28-214ENST00000545540 AMN1Q8IY45 258 aa11.83□□□□□ -0.52
USP28-214ENST00000545540 RNF24Q9Y225 148 aa11.83□□□□□ -0.52
USP28-214ENST00000545540 RASL11AQ6T310 242 aa11.82□□□□□ -0.52
USP28-214ENST00000545540 PRSS3P2Q8NHM4 247 aa11.82□□□□□ -0.52
USP28-214ENST00000545540 UTP20O75691 2785 aaKnown RBP11.82□□□□□ -0.52
USP28-214ENST00000545540 A0A1B0GUT8 65 aa11.82□□□□□ -0.52
USP28-214ENST00000545540 C20orf202A1L168 122 aa11.82□□□□□ -0.52
USP28-214ENST00000545540 ATP5L2Q7Z4Y8 100 aa11.82□□□□□ -0.52
USP28-214ENST00000545540 CREBBPQ92793 2442 aa11.81□□□□□ -0.52
USP28-214ENST00000545540 ZNF207O43670 478 aaKnown RBP11.81□□□□□ -0.52
USP28-214ENST00000545540 LYZL1Q6UWQ5 148 aa11.81□□□□□ -0.52
USP28-214ENST00000545540 SHANK2-AS3Q9BTD1 123 aa11.81□□□□□ -0.52
USP28-214ENST00000545540 NBR2O15453 112 aa11.81□□□□□ -0.52
USP28-214ENST00000545540 MSRB1Q9NZV6 116 aa11.81□□□□□ -0.52
USP28-214ENST00000545540 GAS8-AS1O95177 125 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 RBPJQ06330 500 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 C8orf31Q8N9H6 132 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 ZNF414Q96IQ9 312 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 NAA38Q9BRA0 125 aaKnown RBP11.8□□□□□ -0.52
USP28-214ENST00000545540 C1RLQ9NZP8 487 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 D6R8Y8 96 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 OVOL3O00110 214 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 NEU4Q8WWR8 484 aaPredicted RBP11.8□□□□□ -0.52
USP28-214ENST00000545540 DPM3Q9P2X0 92 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 DOPEY2Q9Y3R5 2298 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 LIPFP07098 398 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 VAMP3Q15836 100 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 VGLL1Q99990 258 aa11.8□□□□□ -0.52
USP28-214ENST00000545540 FANCD2OSQ96PS1 177 aa11.79□□□□□ -0.52
USP28-214ENST00000545540 PSG3Q16557 428 aa11.79□□□□□ -0.52
USP28-214ENST00000545540 RNASE8Q8TDE3 154 aaKnown RBP11.79□□□□□ -0.52
USP28-214ENST00000545540 ERCC8Q13216 396 aa11.79□□□□□ -0.52
USP28-214ENST00000545540 RNF182Q8N6D2 247 aa11.79□□□□□ -0.52
USP28-214ENST00000545540 MAP1LC3CQ9BXW4 147 aa11.79□□□□□ -0.52
USP28-214ENST00000545540 AP5S1Q9NUS5 200 aa11.79□□□□□ -0.52
USP28-214ENST00000545540 LINC00527Q9UJ94 153 aa11.79□□□□□ -0.52
USP28-214ENST00000545540 LY6LH3BQJ8 138 aa11.78□□□□□ -0.52
USP28-214ENST00000545540 UQCRFS1P47985 274 aa11.78□□□□□ -0.52
USP28-214ENST00000545540 ZNF80P51504 273 aaPredicted RBP11.78□□□□□ -0.52
USP28-214ENST00000545540 PLP1P60201 277 aa11.78□□□□□ -0.52
USP28-214ENST00000545540 ZNF492Q9P255 531 aa11.78□□□□□ -0.52
USP28-214ENST00000545540 IGHV3OR16-10A0A075B7F0 116 aa11.78□□□□□ -0.52
USP28-214ENST00000545540 H3BRN7 92 aa11.78□□□□□ -0.52
USP28-214ENST00000545540 SPRY2O43597 315 aa11.78□□□□□ -0.52
USP28-214ENST00000545540 C18orf15Q96N68 181 aa11.78□□□□□ -0.52
USP28-214ENST00000545540 ECSCRQ19T08 205 aa11.77□□□□□ -0.52
USP28-214ENST00000545540 Q6ZQT7 251 aa11.77□□□□□ -0.52
USP28-214ENST00000545540 FA2HQ7L5A8 372 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms