RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 SIGLEC15Q6ZMC9 328 aa7.23□□□□□ -1.25
YBX3-215ENST00000544504 SSX7Q7RTT5 188 aa7.23□□□□□ -1.25
YBX3-215ENST00000544504 LYPD1Q8N2G4 141 aa7.23□□□□□ -1.25
YBX3-215ENST00000544504 DYNLRB2Q8TF09 96 aa7.23□□□□□ -1.25
YBX3-215ENST00000544504 PCNPQ8WW12 178 aaKnown RBP7.23□□□□□ -1.25
YBX3-215ENST00000544504 DLX4Q92988 240 aaPredicted RBP7.23□□□□□ -1.25
YBX3-215ENST00000544504 TCEAL7Q9BRU2 100 aa7.23□□□□□ -1.25
YBX3-215ENST00000544504 GNG13Q9P2W3 67 aa7.23□□□□□ -1.25
YBX3-215ENST00000544504 DYNC2H1Q8NCM8 4307 aaKnown RBP7.22□□□□□ -1.25
YBX3-215ENST00000544504 A0A1B0GV50 99 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 A0A1W2PRE2 83 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 RBFOX3A6NFN3 312 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 OR10J4P0C629 311 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 IGLC2P0DOY2 106 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 BCL2P10415 239 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 PAFAH1B2P68402 229 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 PSG9Q00887 426 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 PEA15Q15121 130 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 LEMD1Q68G75 181 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 UQCC3Q6UW78 93 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 GLMPQ8WWB7 406 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 FXYD5Q96DB9 178 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 FAM210AQ96ND0 272 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 DUX3Q96PT4 197 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 SLC50A1Q9BRV3 221 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 EIF5A2Q9GZV4 153 aaKnown RBP7.22□□□□□ -1.25
YBX3-215ENST00000544504 AAMDCQ9H7C9 122 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 VAX2Q9UIW0 290 aa7.22□□□□□ -1.25
YBX3-215ENST00000544504 TRBV19A0A075B6N1 114 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 IGHV3-49A0A0A0MS15 119 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 TRAV25A0A0B4J276 109 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 F6UZH7 168 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 APOHP02749 345 aaPredicted RBP7.21□□□□□ -1.26
YBX3-215ENST00000544504 PYYP10082 97 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 INSL3P51460 131 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 RPL11P62913 178 aaKnown RBP7.21□□□□□ -1.26
YBX3-215ENST00000544504 MEF2BQ02080 365 aaPredicted RBP7.21□□□□□ -1.26
YBX3-215ENST00000544504 CST9LP1Q5W188 147 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 TCF24Q7RTU0 167 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 COMMD7Q86VX2 200 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 EIF4E3Q8N5X7 224 aaKnown RBP7.21□□□□□ -1.26
YBX3-215ENST00000544504 ARL6IP6Q8N6S5 226 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 OR2K2Q8NGT1 345 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 ZNF503Q96F45 646 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 WWC2-AS2Q96NR7 200 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 MCRIP2Q9BUT9 160 aaKnown RBP7.21□□□□□ -1.26
YBX3-215ENST00000544504 GPR61Q9BZJ8 451 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 TMPRSS5Q9H3S3 457 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 NRN1Q9NPD7 142 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 PRELID1Q9Y255 219 aa7.21□□□□□ -1.26
YBX3-215ENST00000544504 IGHV3OR16-13A0A075B7E8 117 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 IGHV3-74A0A0B4J1X5 117 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 TRAV2A0A0B4J234 112 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 IGHV3-66A0A0C4DH42 116 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 LOC102723971A0A1B0GUV8 181 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 MRPS12O15235 138 aaKnown RBP7.2□□□□□ -1.26
YBX3-215ENST00000544504 PDE6DO43924 150 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 PAGE4O60829 102 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 CSN3P07498 182 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 ID1P41134 155 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 CCL20P78556 96 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 HAGHQ16775 308 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 TOR2AQ5JU69 321 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 ZNF506Q5JVG8 444 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 RBPMS2Q6ZRY4 209 aaKnown RBP7.2□□□□□ -1.26
YBX3-215ENST00000544504 LINC00482Q8N8I6 264 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 BLNKQ8WV28 456 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 RPUSD4Q96CM3 377 aaKnown RBP7.2□□□□□ -1.26
YBX3-215ENST00000544504 OTORQ9NRC9 128 aa7.2□□□□□ -1.26
YBX3-215ENST00000544504 AURKAIP1Q9NWT8 199 aaPredicted RBP7.2□□□□□ -1.26
YBX3-215ENST00000544504 FAM74A7A6NL05 159 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 C11orf94C9JXX5 98 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 TMEM250H0YL14 139 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 H3BQ15 152 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 ISLRO14498 428 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 EIF3GO75821 320 aaKnown RBP eCLIP7.19□□□□□ -1.26
YBX3-215ENST00000544504 CSN1S1P47710 185 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 UBE2G2P60604 165 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 RANP62826 216 aaKnown RBP7.19□□□□□ -1.26
YBX3-215ENST00000544504 C9orf66Q5T8R8 295 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 FAM90A2PQ658T7 463 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 CMTM2Q8TAZ6 248 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 RXFP4Q8TDU9 374 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 ZNF586Q9NXT0 402 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 MLXQ9UH92 298 aa7.19□□□□□ -1.26
YBX3-215ENST00000544504 SERTM2A0A1B0GWG4 89 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 K7EQM0 130 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 DNASE2O00115 360 aaPredicted RBP7.18□□□□□ -1.26
YBX3-215ENST00000544504 TSPAN4O14817 238 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 SAP30O75446 220 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 CD33P20138 364 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 CMC4P56277 68 aaPredicted RBP7.18□□□□□ -1.26
YBX3-215ENST00000544504 SUMO1P63165 101 aaKnown RBP7.18□□□□□ -1.26
YBX3-215ENST00000544504 ICAM4Q14773 271 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 DEFB114Q30KQ6 69 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 C5orf17Q8NAS9 161 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 HIST1H2BAQ96A08 127 aa7.18□□□□□ -1.26
YBX3-215ENST00000544504 MRPL53Q96EL3 112 aaKnown RBP7.18□□□□□ -1.26
YBX3-215ENST00000544504 C16orf92Q96LL3 132 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms