RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.08□□□□□ -0.96
DDX55-210ENST00000543016 RPP25LQ8N5L8 163 aaKnown RBP9.08□□□□□ -0.96
DDX55-210ENST00000543016 LRRC20Q8TCA0 184 aa9.08□□□□□ -0.96
DDX55-210ENST00000543016 PHYHIPLQ96FC7 376 aa9.08□□□□□ -0.96
DDX55-210ENST00000543016 PAXXQ9BUH6 204 aa9.08□□□□□ -0.96
DDX55-210ENST00000543016 C19orf73Q9NVV2 129 aa9.08□□□□□ -0.96
DDX55-210ENST00000543016 CTXND1A0A1B0GTU2 59 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 K7EIL1 84 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 OR7C2O60412 319 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 NBEAP1P0C6P0 100 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 STAG3L2P0CL84 134 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 STAG3L3P0CL85 134 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 PSG9Q00887 426 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 ODF3L2Q3SX64 289 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 SPATA31B1PQ5VZV4 182 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 RNF141Q8WVD5 230 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 RAB24Q969Q5 203 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 TUBA4BQ9H853 241 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 MAP6D1Q9H9H5 199 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 RFNGQ9Y644 331 aa9.07□□□□□ -0.96
DDX55-210ENST00000543016 TRBV19A0A075B6N1 114 aa9.06□□□□□ -0.96
DDX55-210ENST00000543016 CXorf1O96002 111 aa9.06□□□□□ -0.96
DDX55-210ENST00000543016 ZNF688P0C7X2 276 aa9.06□□□□□ -0.96
DDX55-210ENST00000543016 DEFB131AP59861 70 aa9.06□□□□□ -0.96
DDX55-210ENST00000543016 LYPD1Q8N2G4 141 aa9.06□□□□□ -0.96
DDX55-210ENST00000543016 SAT2Q96F10 170 aaPredicted RBP9.06□□□□□ -0.96
DDX55-210ENST00000543016 C17orf77Q96MU5 243 aa9.06□□□□□ -0.96
DDX55-210ENST00000543016 ZNF331Q9NQX6 463 aaPredicted RBP9.06□□□□□ -0.96
DDX55-210ENST00000543016 PRELID1Q9Y255 219 aa9.06□□□□□ -0.96
DDX55-210ENST00000543016 H3BQ15 152 aa9.05□□□□□ -0.96
DDX55-210ENST00000543016 IGHV4-30-4P0DP06 118 aa9.05□□□□□ -0.96
DDX55-210ENST00000543016 SMCPP49901 116 aaPredicted RBP9.05□□□□□ -0.96
DDX55-210ENST00000543016 UBE2L3P68036 154 aaKnown RBP9.05□□□□□ -0.96
DDX55-210ENST00000543016 PSMG4Q5JS54 123 aa9.05□□□□□ -0.96
DDX55-210ENST00000543016 MRAPQ8TCY5 172 aa9.05□□□□□ -0.96
DDX55-210ENST00000543016 TMED6Q8WW62 240 aa9.05□□□□□ -0.96
DDX55-210ENST00000543016 FXYD5Q96DB9 178 aa9.05□□□□□ -0.96
DDX55-210ENST00000543016 AAMDCQ9H7C9 122 aa9.05□□□□□ -0.96
DDX55-210ENST00000543016 TMEM167BQ9NRX6 74 aa9.05□□□□□ -0.96
DDX55-210ENST00000543016 ZNF586Q9NXT0 402 aa9.05□□□□□ -0.96
DDX55-210ENST00000543016 PRB2P02812 416 aaPredicted RBP9.04□□□□□ -0.96
DDX55-210ENST00000543016 PYYP10082 97 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 NKX2-5P52952 324 aaPredicted RBP9.04□□□□□ -0.96
DDX55-210ENST00000543016 PSG3Q16557 428 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 DEFB121Q5J5C9 76 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 FOXI2Q6ZQN5 318 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 FAM24BQ8N5W8 94 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 DEFB125Q8N687 156 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 SUN5Q8TC36 379 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 MBD3L1Q8WWY6 194 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 MRPL53Q96EL3 112 aaKnown RBP9.04□□□□□ -0.96
DDX55-210ENST00000543016 LINC00052Q96N35 136 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 CLUHP3Q96NS8 147 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 SRD5A3Q9H8P0 318 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 UBQLN2Q9UHD9 624 aa9.04□□□□□ -0.96
DDX55-210ENST00000543016 TRAV8-2A0A0B4J237 113 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 KIR2DL5BA0A0G2JN68 375 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 KIR2DL5BA0A0G2JPC4 375 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 TEX46H3BTG2 121 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 OR10J4P0C629 311 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 ARL14EPLP0DKL9 152 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 SULT1A2P50226 295 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 LINC01559Q495D7 138 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 FAM74A1Q5RGS3 127 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 EBLN2Q6P2I7 272 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 KIR2DL5AQ8N109 375 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 ARL6IP6Q8N6S5 226 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 KIR2DL5BQ8NHK3 375 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 ZNF503Q96F45 646 aa9.03□□□□□ -0.96
DDX55-210ENST00000543016 LOC102724200A0A096LPH7 203 aaPredicted RBP9.02□□□□□ -0.97
DDX55-210ENST00000543016 MAP1LC3B2A6NCE7 125 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 DUSP14O95147 198 aaKnown RBP9.02□□□□□ -0.97
DDX55-210ENST00000543016 NDUFB4O95168 129 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 GCHFRP30047 84 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 APOC4P55056 127 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 ZNF726P1Q15940 193 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 LINC00322Q6ZN03 302 aaPredicted RBP9.02□□□□□ -0.97
DDX55-210ENST00000543016 APRG1Q8IVJ8 170 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 STHQ8IWL8 128 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 ZNF738Q8NE65 137 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 FAM213BQ8TBF2 198 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 RXFP4Q8TDU9 374 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 BLNKQ8WV28 456 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 NKX6-2Q9C056 277 aaPredicted RBP9.02□□□□□ -0.97
DDX55-210ENST00000543016 MAP1LC3BQ9GZQ8 125 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 SAV1Q9H4B6 383 aaPredicted RBP9.02□□□□□ -0.97
DDX55-210ENST00000543016 FBN3Q75N90 2809 aa9.02□□□□□ -0.97
DDX55-210ENST00000543016 TRAV1-1A0A0B4J248 108 aa9.01□□□□□ -0.97
DDX55-210ENST00000543016 SLC17A3O00476 420 aa9.01□□□□□ -0.97
DDX55-210ENST00000543016 UBE2CO00762 179 aa9.01□□□□□ -0.97
DDX55-210ENST00000543016 HMGB3O15347 200 aaKnown RBP9.01□□□□□ -0.97
DDX55-210ENST00000543016 H2AFB1P0C5Y9 115 aa9.01□□□□□ -0.97
DDX55-210ENST00000543016 FRMD6-AS1P0C7T7 363 aa9.01□□□□□ -0.97
DDX55-210ENST00000543016 HLA-DRB4P13762 266 aa9.01□□□□□ -0.97
DDX55-210ENST00000543016 CSN1S1P47710 185 aa9.01□□□□□ -0.97
DDX55-210ENST00000543016 PPT1P50897 306 aa9.01□□□□□ -0.97
DDX55-210ENST00000543016 NUTF2P61970 127 aaKnown RBP9.01□□□□□ -0.97
DDX55-210ENST00000543016 MORN3Q6PF18 240 aaPredicted RBP9.01□□□□□ -0.97
DDX55-210ENST00000543016 RPUSD4Q96CM3 377 aaKnown RBP9.01□□□□□ -0.97
DDX55-210ENST00000543016 OTORQ9NRC9 128 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms