RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 C11orf71Q6IPW1 123 aa9.89□□□□□ -0.83
RNF4-222ENST00000541204 MCRIP2Q9BUT9 160 aaKnown RBP9.89□□□□□ -0.83
RNF4-222ENST00000541204 SLC25A39Q9BZJ4 359 aaPredicted RBP9.89□□□□□ -0.83
RNF4-222ENST00000541204 CFAP46Q8IYW2 2715 aa9.89□□□□□ -0.83
RNF4-222ENST00000541204 NPIPB6E9PJ23 425 aa9.89□□□□□ -0.83
RNF4-222ENST00000541204 IGLV2-11P01706 119 aa9.89□□□□□ -0.83
RNF4-222ENST00000541204 RBP4P02753 201 aa9.89□□□□□ -0.83
RNF4-222ENST00000541204 IGLC1P0CG04 106 aa9.89□□□□□ -0.83
RNF4-222ENST00000541204 HTR1DP28221 377 aa9.89□□□□□ -0.83
RNF4-222ENST00000541204 SRSF12Q8WXF0 261 aaKnown RBP9.89□□□□□ -0.83
RNF4-222ENST00000541204 OTORQ9NRC9 128 aa9.89□□□□□ -0.83
RNF4-222ENST00000541204 H0Y8G0 127 aa9.88□□□□□ -0.83
RNF4-222ENST00000541204 TIMM8BQ9Y5J9 83 aaPredicted RBP9.88□□□□□ -0.83
RNF4-222ENST00000541204 S4R3C0 116 aa9.88□□□□□ -0.83
RNF4-222ENST00000541204 CSN3P07498 182 aa9.88□□□□□ -0.83
RNF4-222ENST00000541204 GNLYP22749 145 aa9.88□□□□□ -0.83
RNF4-222ENST00000541204 ZNF738Q8NE65 137 aa9.88□□□□□ -0.83
RNF4-222ENST00000541204 C17orf77Q96MU5 243 aa9.88□□□□□ -0.83
RNF4-222ENST00000541204 NDFIP1Q9BT67 221 aa9.88□□□□□ -0.83
RNF4-222ENST00000541204 VPS13CQ709C8 3753 aa9.87□□□□□ -0.83
RNF4-222ENST00000541204 LY6LH3BQJ8 138 aa9.87□□□□□ -0.83
RNF4-222ENST00000541204 APOHP02749 345 aaPredicted RBP9.87□□□□□ -0.83
RNF4-222ENST00000541204 LY6G5BQ8NDX9 201 aa9.87□□□□□ -0.83
RNF4-222ENST00000541204 RASL11BQ9BPW5 248 aa9.87□□□□□ -0.83
RNF4-222ENST00000541204 CBY1Q9Y3M2 126 aa9.87□□□□□ -0.83
RNF4-222ENST00000541204 ZFP36P26651 326 aaKnown RBP9.87□□□□□ -0.83
RNF4-222ENST00000541204 MPV17L2Q567V2 206 aa9.87□□□□□ -0.83
RNF4-222ENST00000541204 KLF17Q5JT82 389 aaPredicted RBP9.87□□□□□ -0.83
RNF4-222ENST00000541204 DPM3Q9P2X0 92 aa9.87□□□□□ -0.83
RNF4-222ENST00000541204 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.86□□□□□ -0.83
RNF4-222ENST00000541204 FAM231BA6NCW3 169 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 ZNF785A8K8V0 405 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 C19orf84I3L1E1 186 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 I3L2K1 104 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 HAX1O00165 279 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 UBE2V1Q13404 147 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 ZC2HC1AQ96GY0 325 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 ST20Q9HBF5 79 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 CELSR1Q9NYQ6 3014 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 OVOL3O00110 214 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 ERASQ7Z444 233 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 NEU4Q8WWR8 484 aaPredicted RBP9.86□□□□□ -0.83
RNF4-222ENST00000541204 TMUB1Q9BVT8 246 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 C1RLQ9NZP8 487 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 TMEM14CQ9P0S9 112 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 CACNA1BQ00975 2339 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 ARMS2P0C7Q2 107 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 DYNAPQ8N1N2 210 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 PMCHL2Q9BQD1 86 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 MAP1LC3CQ9BXW4 147 aa9.86□□□□□ -0.83
RNF4-222ENST00000541204 NCBP2LA6PVI3 153 aaKnown RBP9.85□□□□□ -0.83
RNF4-222ENST00000541204 IGKV1-17P01599 117 aa9.85□□□□□ -0.83
RNF4-222ENST00000541204 VMO1Q7Z5L0 202 aa9.85□□□□□ -0.83
RNF4-222ENST00000541204 TMEM191AQ9H0A3 160 aa9.85□□□□□ -0.83
RNF4-222ENST00000541204 HOXB4P17483 251 aaPredicted RBP9.85□□□□□ -0.83
RNF4-222ENST00000541204 PAX2Q02962 417 aa9.85□□□□□ -0.83
RNF4-222ENST00000541204 C21orf62-AS1Q17RA5 79 aa9.85□□□□□ -0.83
RNF4-222ENST00000541204 C16orf54Q6UWD8 224 aa9.85□□□□□ -0.83
RNF4-222ENST00000541204 PRORYQ9H606 182 aa9.85□□□□□ -0.83
RNF4-222ENST00000541204 FLNCQ14315 2725 aa9.85□□□□□ -0.83
RNF4-222ENST00000541204 TRBV19A0A075B6N1 114 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 A0A1B0GUT8 65 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 RNASE8Q8TDE3 154 aaKnown RBP9.84□□□□□ -0.83
RNF4-222ENST00000541204 TPPP3Q9BW30 176 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 HSBP1L1C9JCN9 74 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 NBR2O15453 112 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 NUDT3O95989 172 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 OR5AL1P0C617 328 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 SLC25A34Q6PIV7 304 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 OR11H6Q8NGC7 330 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 ITLN2Q8WWU7 325 aaPredicted RBP9.84□□□□□ -0.83
RNF4-222ENST00000541204 SPG11Q96JI7 2443 aa9.84□□□□□ -0.83
RNF4-222ENST00000541204 UTP20O75691 2785 aaKnown RBP9.84□□□□□ -0.83
RNF4-222ENST00000541204 PRTN3P24158 256 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 BPIFA4PQ86YQ2 179 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 CFHR4Q92496 578 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 CEACAM3P40198 252 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 CRIP1P50238 77 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 PET117Q6UWS5 81 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 DTX2Q86UW9 622 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 SHANK2-AS3Q9BTD1 123 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 SCRT2Q9NQ03 307 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 PSG8Q9UQ74 426 aa9.83□□□□□ -0.84
RNF4-222ENST00000541204 K7EIM0 57 aa9.82□□□□□ -0.84
RNF4-222ENST00000541204 SIGLEC15Q6ZMC9 328 aa9.82□□□□□ -0.84
RNF4-222ENST00000541204 TMEM75Q8N9X5 138 aa9.82□□□□□ -0.84
RNF4-222ENST00000541204 HSPB8Q9UJY1 196 aa9.82□□□□□ -0.84
RNF4-222ENST00000541204 ACACBO00763 2458 aa9.82□□□□□ -0.84
RNF4-222ENST00000541204 ZFHX3Q15911 3703 aa9.82□□□□□ -0.84
RNF4-222ENST00000541204 M0R3E3 92 aa9.82□□□□□ -0.84
RNF4-222ENST00000541204 IGSF10Q6WRI0 2623 aa9.81□□□□□ -0.84
RNF4-222ENST00000541204 IGHV2-70DA0A0C4DH43 119 aa9.81□□□□□ -0.84
RNF4-222ENST00000541204 H3BRN7 92 aa9.81□□□□□ -0.84
RNF4-222ENST00000541204 M0R1W7 72 aa9.81□□□□□ -0.84
RNF4-222ENST00000541204 IGHV3-23P01764 117 aa9.81□□□□□ -0.84
RNF4-222ENST00000541204 HLA-DRB1P01911 266 aa9.81□□□□□ -0.84
RNF4-222ENST00000541204 IL4P05112 153 aa9.81□□□□□ -0.84
RNF4-222ENST00000541204 RIGQ13278 110 aa9.81□□□□□ -0.84
RNF4-222ENST00000541204 VAMP3Q15836 100 aa9.81□□□□□ -0.84
RNF4-222ENST00000541204 PSG3Q16557 428 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms