RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 RPP25LQ8N5L8 163 aaKnown RBP8.72□□□□□ -1.01
CLIP1-209ENST00000537178 TIMM21Q9BVV7 248 aa8.72□□□□□ -1.01
CLIP1-209ENST00000537178 IGHV3-73A0A0B4J1V6 119 aa8.72□□□□□ -1.01
CLIP1-209ENST00000537178 IGHV1-3A0A0C4DH29 117 aa8.72□□□□□ -1.01
CLIP1-209ENST00000537178 ZNF474Q6S9Z5 364 aaPredicted RBP8.72□□□□□ -1.01
CLIP1-209ENST00000537178 DMRTC2Q8IXT2 367 aaPredicted RBP8.72□□□□□ -1.01
CLIP1-209ENST00000537178 USMG5Q96IX5 58 aa8.72□□□□□ -1.01
CLIP1-209ENST00000537178 B4DSR2 109 aa8.72□□□□□ -1.01
CLIP1-209ENST00000537178 C5orf64Q2M2E5 130 aa8.72□□□□□ -1.01
CLIP1-209ENST00000537178 CT83Q5H943 113 aa8.72□□□□□ -1.01
CLIP1-209ENST00000537178 VMO1Q7Z5L0 202 aa8.72□□□□□ -1.01
CLIP1-209ENST00000537178 ZNF625Q96I27 306 aaPredicted RBP8.72□□□□□ -1.01
CLIP1-209ENST00000537178 COL6A6A6NMZ7 2263 aa8.72□□□□□ -1.01
CLIP1-209ENST00000537178 SPATA31B1PQ5VZV4 182 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 TMEM14EPQ6UXP3 125 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 SPEGQ15772 3267 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 TRAV13-1A0A0B4J241 112 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 IGKV1-12A0A0C4DH73 117 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 SH2D1AO60880 128 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 IGKV1D-12P01611 117 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 C3orf79P0CE67 100 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 ACTL10Q5JWF8 245 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 NEGR1Q7Z3B1 354 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 TMEM158Q8WZ71 300 aa8.71□□□□□ -1.01
CLIP1-209ENST00000537178 RNF166Q96A37 237 aaPredicted RBP8.71□□□□□ -1.01
CLIP1-209ENST00000537178 A0A0A6YYD4 124 aa8.71□□□□□ -1.02
CLIP1-209ENST00000537178 SYS1-DBNDD2H3BUS1 97 aa8.71□□□□□ -1.02
CLIP1-209ENST00000537178 MPV17L2Q567V2 206 aa8.71□□□□□ -1.02
CLIP1-209ENST00000537178 PYY3Q5JQD4 70 aa8.71□□□□□ -1.02
CLIP1-209ENST00000537178 KLF2Q9Y5W3 355 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-209ENST00000537178 SCN2AQ99250 2005 aa8.71□□□□□ -1.02
CLIP1-209ENST00000537178 FCN3O75636 299 aa8.71□□□□□ -1.02
CLIP1-209ENST00000537178 IGHV3-53P01767 116 aa8.71□□□□□ -1.02
CLIP1-209ENST00000537178 C20orf204Q6ZNR8 217 aa8.71□□□□□ -1.02
CLIP1-209ENST00000537178 C14orf178Q8N769 122 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-209ENST00000537178 PSG3Q16557 428 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 LCN12Q6JVE5 192 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 LIME1Q9H400 295 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 WDFY3Q8IZQ1 3526 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 GAGE2AQ6NT46 116 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 MRPL52Q86TS9 123 aaKnown RBP8.7□□□□□ -1.02
CLIP1-209ENST00000537178 NUP35Q8NFH5 326 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 A0A087X0K7 114 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 hDV102S1A0JD36 115 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 H3BUX3 64 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 KIR3DS1Q14943 382 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 TMEM200BQ69YZ2 307 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 TMEM219Q86XT9 240 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 PIP4P2Q8N4L2 257 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 CITED2Q99967 270 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-209ENST00000537178 INAFM2P0DMQ5 153 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 NMSQ5H8A3 153 aa8.7□□□□□ -1.02
CLIP1-209ENST00000537178 CD5LO43866 347 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 IGHV2-70P01814 119 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 VWCEQ96DN2 955 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 GTSF1LQ9H1H1 148 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 PLSCR4Q9NRQ2 329 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 SPRR3Q9UBC9 169 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 ABCA7Q8IZY2 2146 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 TMEM178BH3BS89 294 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 M0R1W7 72 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 UBE2V1Q13404 147 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 TMEM256Q8N2U0 113 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 Q8TAT8 98 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 C9JAW5 83 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 H3BMM0 161 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 LYPD3O95274 346 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 SELLP14151 372 aa8.69□□□□□ -1.02
CLIP1-209ENST00000537178 RPL35AP18077 110 aaKnown RBP8.69□□□□□ -1.02
CLIP1-209ENST00000537178 RBMY1FQ15415 496 aaKnown RBP8.69□□□□□ -1.02
CLIP1-209ENST00000537178 DEFB121Q5J5C9 76 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 FGFBP3Q8TAT2 258 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 SNHG12Q9BXW3 62 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 PSPNO60542 156 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 IGKV1-5P01602 117 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 ZFP36L1Q07352 338 aaKnown RBP8.68□□□□□ -1.02
CLIP1-209ENST00000537178 RHODO00212 210 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 SOCS3O14543 225 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 SPINK8P0C7L1 97 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 MST1P26927 711 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 CFHR1Q03591 330 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 SPXQ9BT56 116 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 CHAC1Q9BUX1 264 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 RHPN1-AS1Q9BWJ2 59 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 CYTL1Q9NRR1 136 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.68□□□□□ -1.026e-7■■■■■ 33
CLIP1-209ENST00000537178 FAM223BA6NKX1 122 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 ADCYAP1P18509 176 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 CEACAM8P31997 349 aaPredicted RBP8.68□□□□□ -1.02
CLIP1-209ENST00000537178 SUPT4H1P63272 117 aaKnown RBP8.68□□□□□ -1.02
CLIP1-209ENST00000537178 LHFPL4Q7Z7J7 247 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 FAM223AQ8IWN6 122 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 TMEM126AQ9H061 195 aa8.68□□□□□ -1.02
CLIP1-209ENST00000537178 FHL1Q13642 323 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 PKDREJQ9NTG1 2253 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 H0YJW9 148 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 NDPQ00604 133 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 RNF114Q9Y508 228 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 A0A087WV48 116 aa8.67□□□□□ -1.02
CLIP1-209ENST00000537178 FXYD7P58549 80 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms