RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 A0A087X0K7 114 aa12.11□□□□□ -0.47
TRIM3-213ENST00000533309 TMEM218A2RU14 115 aa12.11□□□□□ -0.47
TRIM3-213ENST00000533309 C2orf70A6NJV1 201 aa12.11□□□□□ -0.47
TRIM3-213ENST00000533309 ADCYAP1P18509 176 aa12.11□□□□□ -0.47
TRIM3-213ENST00000533309 RANP62826 216 aaKnown RBP12.11□□□□□ -0.47
TRIM3-213ENST00000533309 TXNDC17Q9BRA2 123 aa12.11□□□□□ -0.47
TRIM3-213ENST00000533309 COL6A5A8TX70 2615 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 SFTA3P0C7M3 94 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 CBLN1P23435 193 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 GALR1P47211 349 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 PDE6HQ13956 83 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 SIGLEC15Q6ZMC9 328 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 CYB561D1Q8N8Q1 229 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 OR9G4Q8NGQ1 327 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 GRAMD2BQ96HH9 432 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 LINC00052Q96N35 136 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 CITED1Q99966 193 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 SLC35B3Q9H1N7 401 aa12.1□□□□□ -0.47
TRIM3-213ENST00000533309 NDUFS6O75380 124 aaKnown RBP12.09□□□□□ -0.47
TRIM3-213ENST00000533309 ATF4P18848 351 aaPredicted RBP12.09□□□□□ -0.47
TRIM3-213ENST00000533309 SUMO1P63165 101 aaKnown RBP12.09□□□□□ -0.47
TRIM3-213ENST00000533309 ELOVL1Q9BW60 279 aa12.09□□□□□ -0.47
TRIM3-213ENST00000533309 Q9H3A6 140 aa12.09□□□□□ -0.47
TRIM3-213ENST00000533309 TMEM250H0YL14 139 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 FAM90A2PQ658T7 463 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 NKX6-2Q9C056 277 aaPredicted RBP12.08□□□□□ -0.48
TRIM3-213ENST00000533309 SELENOKQ9Y6D0 94 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 SCO2A0A1W2PP80 73 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 PDE6DO43924 150 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 ZNF253O75346 499 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 FOLR2P14207 255 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 EXOC3-AS1Q8N2X6 119 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 OTORQ9NRC9 128 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 PEMTQ9UBM1 199 aa12.08□□□□□ -0.48
TRIM3-213ENST00000533309 ZNF785A8K8V0 405 aa12.07□□□□□ -0.48
TRIM3-213ENST00000533309 CSN3P07498 182 aa12.07□□□□□ -0.48
TRIM3-213ENST00000533309 LYPD1Q8N2G4 141 aa12.07□□□□□ -0.48
TRIM3-213ENST00000533309 C11orf52Q96A22 123 aa12.07□□□□□ -0.48
TRIM3-213ENST00000533309 ZNF331Q9NQX6 463 aaPredicted RBP12.07□□□□□ -0.48
TRIM3-213ENST00000533309 MLXQ9UH92 298 aa12.07□□□□□ -0.48
TRIM3-213ENST00000533309 PGPA6NDG6 321 aa12.06□□□□□ -0.48
TRIM3-213ENST00000533309 HELTA6NFD8 242 aa12.06□□□□□ -0.48
TRIM3-213ENST00000533309 KRBOX1C9JBD0 128 aa12.06□□□□□ -0.48
TRIM3-213ENST00000533309 F6UZH7 168 aa12.06□□□□□ -0.48
TRIM3-213ENST00000533309 BMI1P35226 326 aa12.06□□□□□ -0.48
TRIM3-213ENST00000533309 CEBPGP53567 150 aa12.06□□□□□ -0.48
TRIM3-213ENST00000533309 C10orf91Q5T1B1 145 aa12.06□□□□□ -0.48
TRIM3-213ENST00000533309 TCF24Q7RTU0 167 aa12.06□□□□□ -0.48
TRIM3-213ENST00000533309 MEOX2P50222 304 aa12.05□□□□□ -0.48
TRIM3-213ENST00000533309 DERL1Q9BUN8 251 aa12.05□□□□□ -0.48
TRIM3-213ENST00000533309 SEC11CQ9BY50 192 aa12.05□□□□□ -0.48
TRIM3-213ENST00000533309 SORL1Q92673 2214 aa12.05□□□□□ -0.48
TRIM3-213ENST00000533309 TRAV8-2A0A0B4J237 113 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 F8W036 122 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 M0R3E3 92 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 SOCS3O14543 225 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 OVOL1O14753 267 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 SLC25A5P05141 298 aaKnown RBP12.04□□□□□ -0.48
TRIM3-213ENST00000533309 GNG5P63218 68 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 SOHLH1Q5JUK2 328 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 IGFL4Q6B9Z1 124 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 C5orf17Q8NAS9 161 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 C2CD4CQ8TF44 421 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 NRN1Q9NPD7 142 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 S100A1P23297 94 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 HLA-DMBP28068 263 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 PSG9Q00887 426 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 RPUSD4Q96CM3 377 aaKnown RBP12.04□□□□□ -0.48
TRIM3-213ENST00000533309 TCEAL7Q9BRU2 100 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 SLC50A1Q9BRV3 221 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 PARLQ9H300 379 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 EPDR1Q9UM22 224 aa12.04□□□□□ -0.48
TRIM3-213ENST00000533309 CARHSP1Q9Y2V2 147 aaKnown RBP12.04□□□□□ -0.48
TRIM3-213ENST00000533309 M0QZ24 198 aa12.03□□□□□ -0.48
TRIM3-213ENST00000533309 PEX7O00628 323 aa12.03□□□□□ -0.48
TRIM3-213ENST00000533309 AAMDCQ9H7C9 122 aa12.03□□□□□ -0.48
TRIM3-213ENST00000533309 TRRAPQ9Y4A5 3859 aa12.03□□□□□ -0.48
TRIM3-213ENST00000533309 IGKV3-7A0A075B6H7 116 aa12.02□□□□□ -0.49
TRIM3-213ENST00000533309 RPL11P62913 178 aaKnown RBP12.02□□□□□ -0.49
TRIM3-213ENST00000533309 RNF182Q8N6D2 247 aa12.02□□□□□ -0.49
TRIM3-213ENST00000533309 LINC00482Q8N8I6 264 aa12.02□□□□□ -0.49
TRIM3-213ENST00000533309 DCANP1Q8TF63 244 aa12.02□□□□□ -0.49
TRIM3-213ENST00000533309 HIST1H2BAQ96A08 127 aa12.02□□□□□ -0.49
TRIM3-213ENST00000533309 SIGLEC8Q9NYZ4 499 aa12.02□□□□□ -0.49
TRIM3-213ENST00000533309 NOTCH3Q9UM47 2321 aa12.01□□□□□ -0.49
TRIM3-213ENST00000533309 TRBV20OR9-2A0A075B6H5 130 aa12.01□□□□□ -0.49
TRIM3-213ENST00000533309 TCRAP04437 139 aa12.01□□□□□ -0.49
TRIM3-213ENST00000533309 PRB4P10163 310 aaPredicted RBP12.01□□□□□ -0.49
TRIM3-213ENST00000533309 GUCA2BQ16661 112 aa12.01□□□□□ -0.49
TRIM3-213ENST00000533309 ATG101Q9BSB4 218 aa12.01□□□□□ -0.49
TRIM3-213ENST00000533309 RPH3ALQ9UNE2 315 aa12.01□□□□□ -0.49
TRIM3-213ENST00000533309 PF4P02776 101 aa12□□□□□ -0.49
TRIM3-213ENST00000533309 ZNF674Q2M3X9 581 aa12□□□□□ -0.49
TRIM3-213ENST00000533309 DEFB114Q30KQ6 69 aa12□□□□□ -0.49
TRIM3-213ENST00000533309 GBGT1Q8N5D6 347 aa12□□□□□ -0.49
TRIM3-213ENST00000533309 CMTM2Q8TAZ6 248 aa12□□□□□ -0.49
TRIM3-213ENST00000533309 LINC00479Q96M42 142 aa12□□□□□ -0.49
TRIM3-213ENST00000533309 SMIM7Q9BQ49 75 aa12□□□□□ -0.49
TRIM3-213ENST00000533309 ZNF747Q9BV97 191 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms