RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 V9GYQ6 96 aa2.04□□□□□ -2.08
CD44-235ENST00000532339 A0A0D9SG52 128 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 A0A1B0GXF2 115 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 RBFOX3A6NFN3 312 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 F5H768 121 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 K7EP13 123 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 IGLV3-1P01715 115 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 CGB3P0DN86 165 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 CGB7P0DN87 165 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 HAAOP46952 286 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 ZNF137PP52743 207 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 CDC42P60953 191 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 MT1HP80294 61 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 ATP5G2Q06055 141 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 PLGLAQ15195 96 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 BSXQ3C1V8 233 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 Q499Y3 187 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 MESTQ5EB52 335 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 PRSS54Q6PEW0 395 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 DHRS4L2Q6PKH6 230 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 FAM231DQ6ZW35 169 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 NEGR1Q7Z3B1 354 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 ZNF565Q8N9K5 539 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 ZNF555Q8NEP9 628 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 LINC00477Q96M19 166 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 SPACA1Q9HBV2 294 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 IFT46Q9NQC8 304 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 DNAJC27Q9NZQ0 273 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 UFC1Q9Y3C8 167 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 GMEB1Q9Y692 573 aa2.03□□□□□ -2.08
CD44-235ENST00000532339 TRAV26-2A0A0B4J265 109 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 LOC389332A0A1B0GUA5 103 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 ZNF705FA8MVS1 300 aaPredicted RBP2.02□□□□□ -2.09
CD44-235ENST00000532339 FFAR1O14842 300 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 CDRT1O95170 752 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 KRT75O95678 551 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 CA2P00918 260 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 CSN2P05814 226 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 CTSDP07339 412 aaPredicted RBP2.02□□□□□ -2.09
CD44-235ENST00000532339 SEC11BP0C7V7 166 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 ZNF705DP0CH99 300 aaPredicted RBP2.02□□□□□ -2.09
CD44-235ENST00000532339 ZNF705BP0CI00 300 aaPredicted RBP2.02□□□□□ -2.09
CD44-235ENST00000532339 ZNF3P17036 446 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 M6PRP20645 277 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 CRABP1P29762 137 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 RHOGP84095 191 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 BTN1A1Q13410 526 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 CASP8Q14790 479 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 TRAM1Q15629 374 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 LTC4SQ16873 150 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 TDRG1Q3Y452 100 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 FAM104BQ5XKR9 115 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 DNM1P34Q6PK57 102 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 ZNF705AQ6ZN79 300 aaPredicted RBP2.02□□□□□ -2.09
CD44-235ENST00000532339 MSRB3Q8IXL7 192 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 ZNF439Q8NDP4 499 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 OR4B1Q8NGF8 309 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 GRPEL2Q8TAA5 225 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 BLNKQ8WV28 456 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 DEDD2Q8WXF8 326 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 MAGOHBQ96A72 148 aaKnown RBP2.02□□□□□ -2.09
CD44-235ENST00000532339 FMC1Q96HJ9 113 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 OR2A7Q96R45 310 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 LINC00846Q9NV44 126 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 COA4Q9NYJ1 87 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 RBM12B-AS1Q9P1G2 102 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 SNX24Q9Y343 169 aa2.02□□□□□ -2.09
CD44-235ENST00000532339 CPSF4LA6NMK7 179 aaKnown RBP2.01□□□□□ -2.09
CD44-235ENST00000532339 SLC22A1O15245 554 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 TPST1O60507 370 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 NDUFS6O75380 124 aaKnown RBP2.01□□□□□ -2.09
CD44-235ENST00000532339 APOC1P02654 83 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 IL6P05231 212 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 ATP5G1P05496 136 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 CDK1P06493 297 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 LINC00032P0C843 101 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 CRYGAP11844 174 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 TSPOP30536 169 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 HTR2BP41595 481 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 ATP5G3P48201 142 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 OR10A3P58181 314 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 NAA20P61599 178 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 CD164Q04900 197 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 BAXQ07812 192 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 FXYD3Q14802 87 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 GLT8D1Q68CQ7 371 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 SLC25A34Q6PIV7 304 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 PFN4Q8NHR9 129 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 YIPF6Q96EC8 236 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 GNPNAT1Q96EK6 184 aaPredicted RBP2.01□□□□□ -2.09
CD44-235ENST00000532339 CEP19Q96LK0 163 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 PPP3R2Q96LZ3 170 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 Q96M85 177 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 DERL3Q96Q80 235 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 NMNAT1Q9HAN9 279 aaPredicted RBP2.01□□□□□ -2.09
CD44-235ENST00000532339 BABAM2Q9NXR7 383 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 TVP23BQ9NYZ1 205 aa2.01□□□□□ -2.09
CD44-235ENST00000532339 TRAV5A0A0B4J249 113 aa2□□□□□ -2.09
CD44-235ENST00000532339 PQLC2LA1A4F0 135 aa2□□□□□ -2.09
CD44-235ENST00000532339 PRORSD1PA6NEY8 169 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms