RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CRXO43186 299 aaPredicted RBP10.43□□□□□ -0.74
VPS28-215ENST00000531924 TSC22D2O75157 780 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 PRM2P04554 102 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 CXCL3P19876 107 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 TSPOP30536 169 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 TAS2R30P59541 319 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 VAMP2P63027 116 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 TMEM14EPQ6UXP3 125 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 RPUSD4Q96CM3 377 aaKnown RBP10.43□□□□□ -0.74
VPS28-215ENST00000531924 ARV1Q9H2C2 271 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 PCLOQ9Y6V0 5065 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 DNAH2Q9P225 4427 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 A0A1B0GVY2 172 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 PMS2P5A8MQ11 134 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 COX7A2P2O60397 106 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 CCNKO75909 580 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 FAM3BP58499 235 aaPredicted RBP10.42□□□□□ -0.74
VPS28-215ENST00000531924 RAB31Q13636 194 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 CNPY1Q3B7I2 92 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 C1orf134Q5TEV5 83 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 LINC00305Q7Z4B0 112 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 ZBTB8BQ8NAP8 495 aaPredicted RBP10.42□□□□□ -0.74
VPS28-215ENST00000531924 FAT2Q9NYQ8 4349 aa10.42□□□□□ -0.74
VPS28-215ENST00000531924 K7EPK0 472 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 NUDT3O95989 172 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 ATP5G1P05496 136 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 MED14OSP0DP75 135 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 AZU1P20160 251 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 ATP5G3P48201 142 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 BCAP31P51572 246 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 TAS2R60P59551 318 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 LCN15Q6UWW0 184 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 BPIFA4PQ86YQ2 179 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 MITD1Q8WV92 249 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 C16orf74Q96GX8 76 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 SLC50A1Q9BRV3 221 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 GGACTQ9BVM4 153 aa10.41□□□□□ -0.74
VPS28-215ENST00000531924 DNAH17Q9UFH2 4485 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 CBY3A6NI87 242 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 FAM25EA8MYX2 175 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 AGPAT2O15120 278 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 CXCL2P19875 107 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 CDKN1BP46527 198 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 FCN2Q15485 313 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 PATE2Q6UY27 113 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 Q6ZR54 194 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 OR10J6PQ8NGY7 276 aa10.4□□□□□ -0.74
VPS28-215ENST00000531924 RBM38Q9H0Z9 239 aaKnown RBP10.4□□□□□ -0.74
VPS28-215ENST00000531924 TIMM8BQ9Y5J9 83 aaPredicted RBP10.4□□□□□ -0.74
VPS28-215ENST00000531924 SNRPCP09234 159 aaKnown RBP10.39□□□□□ -0.75
VPS28-215ENST00000531924 PRB4P10163 310 aaPredicted RBP10.39□□□□□ -0.75
VPS28-215ENST00000531924 CCL18P55774 89 aa10.39□□□□□ -0.75
VPS28-215ENST00000531924 C10orf113Q5VZT2 155 aa10.39□□□□□ -0.75
VPS28-215ENST00000531924 ZNF493Q6ZR52 646 aa10.39□□□□□ -0.75
VPS28-215ENST00000531924 Q6ZRG5 221 aa10.39□□□□□ -0.75
VPS28-215ENST00000531924 CCDC28AQ8IWP9 274 aa10.39□□□□□ -0.75
VPS28-215ENST00000531924 RCL1Q9Y2P8 373 aaKnown RBP10.39□□□□□ -0.75
VPS28-215ENST00000531924 C7orf66A4D0T2 115 aa10.38□□□□□ -0.75
VPS28-215ENST00000531924 C5orf51A6NDU8 294 aa10.38□□□□□ -0.75
VPS28-215ENST00000531924 H7BYZ3 331 aa10.38□□□□□ -0.75
VPS28-215ENST00000531924 MBPP02686 304 aaPredicted RBP10.38□□□□□ -0.75
VPS28-215ENST00000531924 IL7P13232 177 aa10.38□□□□□ -0.75
VPS28-215ENST00000531924 CAV2P51636 162 aa10.38□□□□□ -0.75
VPS28-215ENST00000531924 CLINT1Q14677 625 aa10.38□□□□□ -0.75
VPS28-215ENST00000531924 C20orf85Q9H1P6 137 aa10.38□□□□□ -0.75
VPS28-215ENST00000531924 NOP10Q9NPE3 64 aaKnown RBP10.38□□□□□ -0.75
VPS28-215ENST00000531924 ZNF331Q9NQX6 463 aaPredicted RBP10.38□□□□□ -0.75
VPS28-215ENST00000531924 LSM5Q9Y4Y9 91 aaKnown RBP10.38□□□□□ -0.75
VPS28-215ENST00000531924 PXMP4Q9Y6I8 212 aa10.38□□□□□ -0.75
VPS28-215ENST00000531924 PKHD1P08F94 4074 aa10.38□□□□□ -0.75
VPS28-215ENST00000531924 H3BTX0 84 aa10.37□□□□□ -0.75
VPS28-215ENST00000531924 CCSO14618 274 aa10.37□□□□□ -0.75
VPS28-215ENST00000531924 PVALBP20472 110 aaPredicted RBP10.37□□□□□ -0.75
VPS28-215ENST00000531924 BTCP35070 178 aa10.37□□□□□ -0.75
VPS28-215ENST00000531924 CAMLGP49069 296 aa10.37□□□□□ -0.75
VPS28-215ENST00000531924 ARL16Q0P5N6 197 aa10.37□□□□□ -0.75
VPS28-215ENST00000531924 MGST2Q99735 147 aa10.37□□□□□ -0.75
VPS28-215ENST00000531924 DNAJC4Q9NNZ3 241 aa10.37□□□□□ -0.75
VPS28-215ENST00000531924 PLAC8L1A1L4L8 177 aa10.36□□□□□ -0.75
VPS28-215ENST00000531924 MRPS12O15235 138 aaKnown RBP10.36□□□□□ -0.75
VPS28-215ENST00000531924 OR1L4Q8NGR5 311 aa10.36□□□□□ -0.75
VPS28-215ENST00000531924 TMEM263Q8WUH6 116 aaKnown RBP10.36□□□□□ -0.75
VPS28-215ENST00000531924 SDHCQ99643 169 aaPredicted RBP10.36□□□□□ -0.75
VPS28-215ENST00000531924 C20orf144Q9BQM9 153 aa10.36□□□□□ -0.75
VPS28-215ENST00000531924 TRAV6A0A075B6T7 132 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 LYRM1O43325 122 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 CST7O76096 145 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 OR5I1Q13606 314 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 OPCMLQ14982 345 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 GUK1Q16774 197 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 NRARPQ7Z6K4 114 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 TMEM37Q8WXS4 190 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 PFDN5Q99471 154 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 UQCC1Q9NVA1 299 aa10.35□□□□□ -0.75
VPS28-215ENST00000531924 NBDYA0A0U1RRE5 68 aa10.34□□□□□ -0.75
VPS28-215ENST00000531924 SNURFLB1AK76 121 aa10.34□□□□□ -0.75
VPS28-215ENST00000531924 J3KRW8 73 aa10.34□□□□□ -0.75
VPS28-215ENST00000531924 RLN2P04090 185 aa10.34□□□□□ -0.75
VPS28-215ENST00000531924 LEPP41159 167 aa10.34□□□□□ -0.75
VPS28-215ENST00000531924 S100A10P60903 97 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms