RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ZNF253O75346 499 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 GALR1P47211 349 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 C5orf17Q8NAS9 161 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 GRAMD2BQ96HH9 432 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 OR5B12Q96R08 314 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 PGPA6NDG6 321 aa16.22■□□□□ 0.19
VPS28-212ENST00000530836 ATF4P18848 351 aaPredicted RBP16.22■□□□□ 0.19
VPS28-212ENST00000530836 PSG9Q00887 426 aa16.22■□□□□ 0.19
VPS28-212ENST00000530836 ATRAIDQ6UW56 229 aa16.22■□□□□ 0.19
VPS28-212ENST00000530836 UNQ9165/PRO28630Q6UXU0 137 aa16.22■□□□□ 0.19
VPS28-212ENST00000530836 C4orf3Q8WVX3 66 aa16.22■□□□□ 0.19
VPS28-212ENST00000530836 DAZ1Q9NQZ3 744 aaKnown RBP16.22■□□□□ 0.19
VPS28-212ENST00000530836 UFC1Q9Y3C8 167 aa16.22■□□□□ 0.19
VPS28-212ENST00000530836 A0A087X0K7 114 aa16.21■□□□□ 0.19
VPS28-212ENST00000530836 ZNF320A2RRD8 509 aa16.21■□□□□ 0.19
VPS28-212ENST00000530836 EPDR1Q9UM22 224 aa16.21■□□□□ 0.19
VPS28-212ENST00000530836 HELTA6NFD8 242 aa16.2■□□□□ 0.18
VPS28-212ENST00000530836 SLC25A5P05141 298 aaKnown RBP16.2■□□□□ 0.18
VPS28-212ENST00000530836 BMI1P35226 326 aa16.2■□□□□ 0.18
VPS28-212ENST00000530836 SHISA2Q6UWI4 295 aa16.2■□□□□ 0.18
VPS28-212ENST00000530836 CMTM2Q8TAZ6 248 aa16.2■□□□□ 0.18
VPS28-212ENST00000530836 C2CD4CQ8TF44 421 aa16.2■□□□□ 0.18
VPS28-212ENST00000530836 CITED1Q99966 193 aa16.2■□□□□ 0.18
VPS28-212ENST00000530836 AAMDCQ9H7C9 122 aa16.2■□□□□ 0.18
VPS28-212ENST00000530836 PRELID1Q9Y255 219 aa16.2■□□□□ 0.18
VPS28-212ENST00000530836 DNHD1Q96M86 4753 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 C9JCJ5 164 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 C16orf54Q6UWD8 224 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 ARL6IP6Q8N6S5 226 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 LY96Q9Y6Y9 160 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 C7orf77A4D0Y5 90 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 LGALS9O00182 355 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 PEX7O00628 323 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 ZNF207O43670 478 aaKnown RBP16.19■□□□□ 0.18
VPS28-212ENST00000530836 S100A9P06702 114 aaKnown RBP16.19■□□□□ 0.18
VPS28-212ENST00000530836 SNRPCP09234 159 aaKnown RBP16.19■□□□□ 0.18
VPS28-212ENST00000530836 RPL35P42766 123 aaKnown RBP16.19■□□□□ 0.18
VPS28-212ENST00000530836 CNN1P51911 297 aaKnown RBP16.19■□□□□ 0.18
VPS28-212ENST00000530836 TAS2R60P59551 318 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 SIGLEC15Q6ZMC9 328 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 REC114Q7Z4M0 266 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 ATG101Q9BSB4 218 aa16.19■□□□□ 0.18
VPS28-212ENST00000530836 ZNF785A8K8V0 405 aa16.18■□□□□ 0.18
VPS28-212ENST00000530836 SCO1O75880 301 aa16.18■□□□□ 0.18
VPS28-212ENST00000530836 AKR1C3P42330 323 aa16.18■□□□□ 0.18
VPS28-212ENST00000530836 TCTEX1D4Q5JR98 221 aa16.18■□□□□ 0.18
VPS28-212ENST00000530836 DERL1Q9BUN8 251 aa16.18■□□□□ 0.18
VPS28-212ENST00000530836 RPS10P5Q9NQ39 176 aa16.18■□□□□ 0.18
VPS28-212ENST00000530836 SMAD5-AS1Q9Y6J3 95 aa16.18■□□□□ 0.18
VPS28-212ENST00000530836 ANK2Q01484 3957 aa16.18■□□□□ 0.18
VPS28-212ENST00000530836 A0A087WWC5 75 aa16.17■□□□□ 0.18
VPS28-212ENST00000530836 IGHV7-4-1A0A0J9YVY3 117 aa16.17■□□□□ 0.18
VPS28-212ENST00000530836 H3BTX0 84 aa16.17■□□□□ 0.18
VPS28-212ENST00000530836 APOHP02749 345 aaPredicted RBP16.17■□□□□ 0.18
VPS28-212ENST00000530836 A8MWP6 167 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 GLMPQ8WWB7 406 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 C17orf77Q96MU5 243 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 SLC50A1Q9BRV3 221 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 IGHV4OR15-8A0A075B7B6 117 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 A0A087WW49 117 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 CD28P10747 220 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 RPL23P62829 140 aaKnown RBP16.16■□□□□ 0.18
VPS28-212ENST00000530836 C1QL4Q86Z23 238 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 C11orf44Q8N8P7 122 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 CLEC5AQ9NY25 188 aa16.16■□□□□ 0.18
VPS28-212ENST00000530836 SERTM2A0A1B0GWG4 89 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 LINC01619G3V211 115 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 TCRAP04437 139 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 HOXD3P31249 432 aaPredicted RBP16.15■□□□□ 0.18
VPS28-212ENST00000530836 CSN1S1P47710 185 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 GNG4P50150 75 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 BTN1A1Q13410 526 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 ADIRFQ15847 76 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 KHDC1LQ5JSQ8 128 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 EXOC3-AS1Q8N2X6 119 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 SMPXQ9UHP9 88 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 KLF12Q9Y4X4 402 aa16.15■□□□□ 0.18
VPS28-212ENST00000530836 IGHV3-66A0A0C4DH42 116 aa16.14■□□□□ 0.17
VPS28-212ENST00000530836 K7EQM0 130 aa16.14■□□□□ 0.17
VPS28-212ENST00000530836 SLC17A3O00476 420 aa16.14■□□□□ 0.17
VPS28-212ENST00000530836 TMEM183BQ1AE95 376 aa16.14■□□□□ 0.17
VPS28-212ENST00000530836 LINC01551Q86U37 167 aa16.14■□□□□ 0.17
VPS28-212ENST00000530836 DPF1Q92782 380 aa16.14■□□□□ 0.17
VPS28-212ENST00000530836 FMC1Q96HJ9 113 aa16.14■□□□□ 0.17
VPS28-212ENST00000530836 ZNF331Q9NQX6 463 aaPredicted RBP16.14■□□□□ 0.17
VPS28-212ENST00000530836 SMCO4Q9NRQ5 59 aa16.14■□□□□ 0.17
VPS28-212ENST00000530836 TRBV20OR9-2A0A075B6H5 130 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 IGHV3OR16-13A0A075B7E8 117 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 IGHV3-49A0A0A0MS15 119 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 IGHV3-74A0A0B4J1X5 117 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 UBE2G1P62253 170 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 TM4SF20Q53R12 229 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 KLHL30-AS1Q8NEE0 82 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 SMIM12Q96EX1 92 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 RHPN1-AS1Q9BWJ2 59 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 TMEM242Q9NWH2 141 aa16.13■□□□□ 0.17
VPS28-212ENST00000530836 TSSC4Q9Y5U2 329 aaPredicted RBP16.13■□□□□ 0.17
VPS28-212ENST00000530836 MT-ND4LP03901 98 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 GNG5P63218 68 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 KLF5Q13887 457 aaPredicted RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms