RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PRR30Q53SZ7 412 aaPredicted RBP11.3□□□□□ -0.6
USP48-213ENST00000529637 IGF2-ASQ6U949 168 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 S100A7AQ86SG5 101 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 PERPQ96FX8 193 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 IGF2RP11717 2491 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 ATRXP46100 2492 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 AKAP6Q13023 2319 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 LOC389332A0A1B0GUA5 103 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 FCN3O75636 299 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 PPIAL4GP0DN37 164 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 COL8A1P27658 744 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 CACNG8Q8WXS5 425 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 RITA1Q96K30 269 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 CTSZQ9UBR2 303 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 ZNF785A8K8V0 405 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 C22orf46C9J442 243 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 IFI27P40305 119 aaPredicted RBP11.3□□□□□ -0.6
USP48-213ENST00000529637 PCP2Q8IVA1 136 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 OR1L4Q8NGR5 311 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 RNASE6Q93091 150 aaKnown RBP11.3□□□□□ -0.6
USP48-213ENST00000529637 NPFFR1Q9GZQ6 430 aa11.3□□□□□ -0.6
USP48-213ENST00000529637 TCRAP04437 139 aa11.29□□□□□ -0.6
USP48-213ENST00000529637 COX7A1P24310 79 aa11.29□□□□□ -0.6
USP48-213ENST00000529637 ATP5IP56385 69 aaPredicted RBP11.29□□□□□ -0.6
USP48-213ENST00000529637 CACNA1BQ00975 2339 aa11.29□□□□□ -0.6
USP48-213ENST00000529637 RBPJQ06330 500 aa11.29□□□□□ -0.6
USP48-213ENST00000529637 TMEM167AQ8TBQ9 72 aa11.29□□□□□ -0.6
USP48-213ENST00000529637 INSIG2Q9Y5U4 225 aa11.29□□□□□ -0.6
USP48-213ENST00000529637 SPCS1Q9Y6A9 102 aa11.29□□□□□ -0.6
USP48-213ENST00000529637 PRSS3P2Q8NHM4 247 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 TPPP3Q9BW30 176 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 F11RQ9Y624 299 aaKnown RBP11.28□□□□□ -0.6
USP48-213ENST00000529637 NHLH1Q02575 133 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 CT83Q5H943 113 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 Q9H3A6 140 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 JKAMPQ9P055 326 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 A0A1W2PPI3 338 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 A6NDN8 102 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 HAX1O00165 279 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 LOXP28300 417 aaPredicted RBP11.28□□□□□ -0.6
USP48-213ENST00000529637 RPL24P83731 157 aaKnown RBP11.28□□□□□ -0.6
USP48-213ENST00000529637 ADAMTSL5Q6ZMM2 481 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 PRNTQ86SH4 94 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 BOD1L2Q8IYS8 172 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 GTSF1LQ9H1H1 148 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 NGBQ9NPG2 151 aa11.28□□□□□ -0.6
USP48-213ENST00000529637 SOX21Q9Y651 276 aaPredicted RBP11.28□□□□□ -0.6
USP48-213ENST00000529637 TEX48A0A1B0GUV7 120 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 PLP1P60201 277 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 PLGLAQ15195 96 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 EXOC3-AS1Q8N2X6 119 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 A0A1W2PPM0 123 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 FBLL1A6NHQ2 334 aaKnown RBP11.27□□□□□ -0.61
USP48-213ENST00000529637 CNTFRP26992 372 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 CACNG7P62955 275 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 SAMD13Q5VXD3 122 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 GFRA4Q9GZZ7 299 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 ZNF492Q9P255 531 aa11.27□□□□□ -0.61
USP48-213ENST00000529637 K7EMI3 77 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 FA2HQ7L5A8 372 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 WFDC3Q8IUB2 231 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 SRSF12Q8WXF0 261 aaKnown RBP11.26□□□□□ -0.61
USP48-213ENST00000529637 FMC1Q96HJ9 113 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 C18orf15Q96N68 181 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 TTTY13Q9BZ97 58 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 E7EQL1 145 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 NPIPB6E9PJ23 425 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 CLUHP3Q96NS8 147 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 SPTAN1Q13813 2472 aaKnown RBP11.26□□□□□ -0.61
USP48-213ENST00000529637 A1L4Q6 167 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 IGHV1-8P0DP01 117 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 RPL27AP46776 148 aaKnown RBP11.26□□□□□ -0.61
USP48-213ENST00000529637 NMUP48645 174 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 FOXC1Q12948 553 aa11.26□□□□□ -0.61
USP48-213ENST00000529637 SMAD7O15105 426 aaKnown RBP11.25□□□□□ -0.61
USP48-213ENST00000529637 IGLV2-11P01706 119 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 GP9P14770 177 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 AZU1P20160 251 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 MC5RP33032 325 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 CSN1S1P47710 185 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 SMAGPQ0VAQ4 97 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 TCF15Q12870 199 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 GOLT1AQ6ZVE7 132 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 Q86TA4 180 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 ARHGAP32A7KAX9 2087 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 LRBAP50851 2863 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 PPIAL4CA0A0B4J2A2 164 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 A0A1B0GUT8 65 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 ASCL5Q7RTU5 278 aa11.25□□□□□ -0.61
USP48-213ENST00000529637 TMEM133Q9H2Q1 129 aa11.24□□□□□ -0.61
USP48-213ENST00000529637 FAM90A27PA6NNH2 459 aa11.24□□□□□ -0.61
USP48-213ENST00000529637 K7ERJ3 54 aa11.24□□□□□ -0.61
USP48-213ENST00000529637 IGLV2-23P01705 113 aa11.24□□□□□ -0.61
USP48-213ENST00000529637 TMEM155Q4W5P6 130 aa11.24□□□□□ -0.61
USP48-213ENST00000529637 THAP8Q8NA92 274 aa11.24□□□□□ -0.61
USP48-213ENST00000529637 LINC01560Q8TB33 94 aa11.24□□□□□ -0.61
USP48-213ENST00000529637 FCGR2BP31994 310 aaPredicted RBP11.24□□□□□ -0.61
USP48-213ENST00000529637 HSD52Q0P140 79 aa11.24□□□□□ -0.61
USP48-213ENST00000529637 Q8NA96 180 aa11.24□□□□□ -0.61
USP48-213ENST00000529637 SIGLEC8Q9NYZ4 499 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms