RNA–Protein interactions for RNA: ENST00000528563.5

HIF3A-211, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2

Gene HIF3A, Length 1,486 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-211ENST00000528563 HRH4Q9H3N8 390 aa12.21□□□□□ -0.45
HIF3A-211ENST00000528563 X6R8D5 127 aa12.21□□□□□ -0.45
HIF3A-211ENST00000528563 KMT2CQ8NEZ4 4911 aaKnown RBP12.21□□□□□ -0.45
HIF3A-211ENST00000528563 H3BQ15 152 aa12.21□□□□□ -0.46
HIF3A-211ENST00000528563 IGLC2P0DOY2 106 aa12.21□□□□□ -0.46
HIF3A-211ENST00000528563 PSG9Q00887 426 aa12.21□□□□□ -0.46
HIF3A-211ENST00000528563 OXA1LQ15070 435 aa12.21□□□□□ -0.46
HIF3A-211ENST00000528563 PSG3Q16557 428 aa12.21□□□□□ -0.46
HIF3A-211ENST00000528563 Q8NAQ8 132 aa12.21□□□□□ -0.46
HIF3A-211ENST00000528563 ATP5SQ99766 215 aa12.21□□□□□ -0.46
HIF3A-211ENST00000528563 ZNF331Q9NQX6 463 aaPredicted RBP12.21□□□□□ -0.46
HIF3A-211ENST00000528563 SNRPCP09234 159 aaKnown RBP12.2□□□□□ -0.46
HIF3A-211ENST00000528563 CXCL2P19875 107 aa12.2□□□□□ -0.46
HIF3A-211ENST00000528563 HLA-DMBP28068 263 aa12.2□□□□□ -0.46
HIF3A-211ENST00000528563 GCSAMLQ5JQS6 135 aa12.2□□□□□ -0.46
HIF3A-211ENST00000528563 LCN15Q6UWW0 184 aa12.2□□□□□ -0.46
HIF3A-211ENST00000528563 AMTNQ6UX39 209 aa12.2□□□□□ -0.46
HIF3A-211ENST00000528563 LRRC20Q8TCA0 184 aa12.2□□□□□ -0.46
HIF3A-211ENST00000528563 SAT2Q96F10 170 aaPredicted RBP12.2□□□□□ -0.46
HIF3A-211ENST00000528563 DEFB4AO15263 64 aa12.19□□□□□ -0.46
HIF3A-211ENST00000528563 RBMY1A1P0DJD3 496 aaKnown RBP12.19□□□□□ -0.46
HIF3A-211ENST00000528563 RBMY1CP0DJD4 496 aa12.19□□□□□ -0.46
HIF3A-211ENST00000528563 MIFP14174 115 aa12.19□□□□□ -0.46
HIF3A-211ENST00000528563 FXYD7P58549 80 aa12.19□□□□□ -0.46
HIF3A-211ENST00000528563 RBMY1FQ15415 496 aaKnown RBP12.19□□□□□ -0.46
HIF3A-211ENST00000528563 SLC35B3Q9H1N7 401 aa12.19□□□□□ -0.46
HIF3A-211ENST00000528563 H3BTX0 84 aa12.18□□□□□ -0.46
HIF3A-211ENST00000528563 DUSP14O95147 198 aaKnown RBP12.18□□□□□ -0.46
HIF3A-211ENST00000528563 ZNF705DP0CH99 300 aaPredicted RBP12.18□□□□□ -0.46
HIF3A-211ENST00000528563 ZNF705BP0CI00 300 aaPredicted RBP12.18□□□□□ -0.46
HIF3A-211ENST00000528563 CNN1P51911 297 aaKnown RBP12.18□□□□□ -0.46
HIF3A-211ENST00000528563 Q5BKY6 102 aa12.18□□□□□ -0.46
HIF3A-211ENST00000528563 ZNF705AQ6ZN79 300 aaPredicted RBP12.18□□□□□ -0.46
HIF3A-211ENST00000528563 ZNF738Q8NE65 137 aa12.18□□□□□ -0.46
HIF3A-211ENST00000528563 SLC50A1Q9BRV3 221 aa12.18□□□□□ -0.46
HIF3A-211ENST00000528563 SMIM3Q9BZL3 60 aa12.18□□□□□ -0.46
HIF3A-211ENST00000528563 WFDC1Q9HC57 220 aa12.18□□□□□ -0.46
HIF3A-211ENST00000528563 TMEM14CQ9P0S9 112 aa12.18□□□□□ -0.46
HIF3A-211ENST00000528563 IGHV4-28A0A0C4DH34 117 aa12.17□□□□□ -0.46
HIF3A-211ENST00000528563 SLC17A3O00476 420 aa12.17□□□□□ -0.46
HIF3A-211ENST00000528563 GIPP09681 153 aaPredicted RBP12.17□□□□□ -0.46
HIF3A-211ENST00000528563 GUK1Q16774 197 aa12.17□□□□□ -0.46
HIF3A-211ENST00000528563 OR8A1Q8NGG7 326 aa12.17□□□□□ -0.46
HIF3A-211ENST00000528563 ASB13Q8WXK3 278 aa12.17□□□□□ -0.46
HIF3A-211ENST00000528563 PARD6GQ9BYG4 376 aaPredicted RBP12.17□□□□□ -0.46
HIF3A-211ENST00000528563 KCNIP2Q9NS61 270 aa12.17□□□□□ -0.46
HIF3A-211ENST00000528563 ZNF586Q9NXT0 402 aa12.17□□□□□ -0.46
HIF3A-211ENST00000528563 ZNF705FA8MVS1 300 aaPredicted RBP12.16□□□□□ -0.46
HIF3A-211ENST00000528563 C17orf112F2Z3M2 114 aa12.16□□□□□ -0.46
HIF3A-211ENST00000528563 IFNA5P01569 189 aa12.16□□□□□ -0.46
HIF3A-211ENST00000528563 RPUSD4Q96CM3 377 aaKnown RBP12.16□□□□□ -0.46
HIF3A-211ENST00000528563 FAM167A-AS1Q96KT0 104 aa12.16□□□□□ -0.46
HIF3A-211ENST00000528563 NEU1Q99519 415 aa12.16□□□□□ -0.46
HIF3A-211ENST00000528563 CXorf65A6NEN9 183 aa12.15□□□□□ -0.46
HIF3A-211ENST00000528563 ZNF253O75346 499 aa12.15□□□□□ -0.46
HIF3A-211ENST00000528563 C11orf45Q8TAV5 145 aa12.15□□□□□ -0.46
HIF3A-211ENST00000528563 SCGB1C1Q8TD33 95 aa12.15□□□□□ -0.46
HIF3A-211ENST00000528563 MFFQ9GZY8 342 aa12.15□□□□□ -0.46
HIF3A-211ENST00000528563 TRBV19A0A075B6N1 114 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 HIST1H1EP10412 219 aaKnown RBP12.14□□□□□ -0.47
HIF3A-211ENST00000528563 PMS2P11Q13670 270 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 MIR17HGQ75NE6 70 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 C1orf158Q8N1D5 194 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 SLC25A2Q9BXI2 301 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 SMIM9A6NGZ8 99 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 NDUFB4O95168 129 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 PYYP10082 97 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 NANOS2P60321 138 aaKnown RBP12.14□□□□□ -0.47
HIF3A-211ENST00000528563 HIST1H1AQ02539 215 aaPredicted RBP12.14□□□□□ -0.47
HIF3A-211ENST00000528563 CEMP1Q6PRD7 247 aaPredicted RBP12.14□□□□□ -0.47
HIF3A-211ENST00000528563 AQP10Q96PS8 301 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 RFNGQ9Y644 331 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 STARD9Q9P2P6 4700 aa12.14□□□□□ -0.47
HIF3A-211ENST00000528563 PRAC2D3DTV9 90 aa12.13□□□□□ -0.47
HIF3A-211ENST00000528563 CRXO43186 299 aaPredicted RBP12.13□□□□□ -0.47
HIF3A-211ENST00000528563 AMBPP02760 352 aa12.13□□□□□ -0.47
HIF3A-211ENST00000528563 PRB4P10163 310 aaPredicted RBP12.13□□□□□ -0.47
HIF3A-211ENST00000528563 FFAR4Q5NUL3 377 aa12.13□□□□□ -0.47
HIF3A-211ENST00000528563 IGF2BP2-AS1Q96M15 143 aa12.13□□□□□ -0.47
HIF3A-211ENST00000528563 MRPL32Q9BYC8 188 aaKnown RBP12.13□□□□□ -0.47
HIF3A-211ENST00000528563 FUT9Q9Y231 359 aa12.13□□□□□ -0.47
HIF3A-211ENST00000528563 LCE6AA0A183 80 aa12.12□□□□□ -0.47
HIF3A-211ENST00000528563 M0R2Z0 102 aa12.12□□□□□ -0.47
HIF3A-211ENST00000528563 PDE6HQ13956 83 aa12.12□□□□□ -0.47
HIF3A-211ENST00000528563 SPINK13Q1W4C9 94 aa12.12□□□□□ -0.47
HIF3A-211ENST00000528563 PHLDA1Q8WV24 401 aaPredicted RBP12.12□□□□□ -0.47
HIF3A-211ENST00000528563 IGHV3OR16-12A0A075B7B8 117 aa12.11□□□□□ -0.47
HIF3A-211ENST00000528563 NUPR2A6NF83 97 aa12.11□□□□□ -0.47
HIF3A-211ENST00000528563 NBEAP1P0C6P0 100 aa12.11□□□□□ -0.47
HIF3A-211ENST00000528563 RHOBP62745 196 aa12.11□□□□□ -0.47
HIF3A-211ENST00000528563 OR51M1Q9H341 326 aa12.11□□□□□ -0.47
HIF3A-211ENST00000528563 GOLT1BQ9Y3E0 138 aa12.11□□□□□ -0.47
HIF3A-211ENST00000528563 BOLA2-SMG1P6H3BVE0 249 aa12.1□□□□□ -0.47
HIF3A-211ENST00000528563 OR2T35Q8NGX2 323 aa12.1□□□□□ -0.47
HIF3A-211ENST00000528563 TIMM9Q9Y5J7 89 aa12.1□□□□□ -0.47
HIF3A-211ENST00000528563 OR10J6PQ8NGY7 276 aa12.09□□□□□ -0.47
HIF3A-211ENST00000528563 BLNKQ8WV28 456 aa12.09□□□□□ -0.47
HIF3A-211ENST00000528563 RNF141Q8WVD5 230 aa12.09□□□□□ -0.47
HIF3A-211ENST00000528563 FXYD5Q96DB9 178 aa12.09□□□□□ -0.47
HIF3A-211ENST00000528563 MRPL53Q96EL3 112 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms