RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.96■□□□□ 0.15
VPS28-209ENST00000528142 PF4V1P10720 104 aa15.96■□□□□ 0.15
VPS28-209ENST00000528142 RAB9AP51151 201 aa15.96■□□□□ 0.15
VPS28-209ENST00000528142 SNRPEP62304 92 aaKnown RBP15.96■□□□□ 0.15
VPS28-209ENST00000528142 IBA57Q5T440 356 aaKnown RBP15.96■□□□□ 0.15
VPS28-209ENST00000528142 FAM231DQ6ZW35 169 aa15.96■□□□□ 0.15
VPS28-209ENST00000528142 BTF3L4Q96K17 158 aa15.96■□□□□ 0.15
VPS28-209ENST00000528142 FLNAP21333 2647 aaKnown RBP15.96■□□□□ 0.15
VPS28-209ENST00000528142 ARL3P36405 182 aa15.96■□□□□ 0.14
VPS28-209ENST00000528142 TMEM95Q3KNT9 176 aa15.96■□□□□ 0.14
VPS28-209ENST00000528142 GOLT1AQ6ZVE7 132 aa15.96■□□□□ 0.14
VPS28-209ENST00000528142 U3KQE9 123 aa15.96■□□□□ 0.14
VPS28-209ENST00000528142 TRAV9-1A0A075B6T8 112 aa15.95■□□□□ 0.14
VPS28-209ENST00000528142 TRBV6-1A0A0K0K1D8 114 aa15.95■□□□□ 0.14
VPS28-209ENST00000528142 TRBV12-3P01733 135 aa15.95■□□□□ 0.14
VPS28-209ENST00000528142 S100A6P06703 90 aa15.95■□□□□ 0.14
VPS28-209ENST00000528142 FRZBQ92765 325 aa15.95■□□□□ 0.14
VPS28-209ENST00000528142 ZNF320A2RRD8 509 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST1H2BKO60814 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST1H2BJP06899 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST1H2BOP23527 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST1H2BBP33778 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST1H2BDP58876 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST1H2BCP62807 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 PSG9Q00887 426 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST2H2BEQ16778 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 RPEL1Q2QD12 228 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST1H2BHQ93079 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST1H2BNQ99877 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HIST1H2BMQ99879 126 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 TRAV8-1A0A0A6YYK1 113 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 HOXA3O43365 443 aaPredicted RBP15.94■□□□□ 0.14
VPS28-209ENST00000528142 ZNF253O75346 499 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 C1orf194Q5T5A4 169 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 Q86TA4 180 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 METTL26Q96S19 204 aa15.94■□□□□ 0.14
VPS28-209ENST00000528142 A0A0G2JLM5 398 aa15.93■□□□□ 0.14
VPS28-209ENST00000528142 DIRC3C9JPN6 131 aa15.93■□□□□ 0.14
VPS28-209ENST00000528142 M0R3E3 92 aa15.93■□□□□ 0.14
VPS28-209ENST00000528142 SMAD7O15105 426 aaKnown RBP15.93■□□□□ 0.14
VPS28-209ENST00000528142 IGHG4P01861 327 aa15.93■□□□□ 0.14
VPS28-209ENST00000528142 APOHP02749 345 aaPredicted RBP15.93■□□□□ 0.14
VPS28-209ENST00000528142 TRGC1P0CF51 173 aa15.93■□□□□ 0.14
VPS28-209ENST00000528142 LCNL1Q6ZST4 164 aa15.93■□□□□ 0.14
VPS28-209ENST00000528142 AAMDCQ9H7C9 122 aa15.93■□□□□ 0.14
VPS28-209ENST00000528142 A0A087X0K7 114 aa15.92■□□□□ 0.14
VPS28-209ENST00000528142 IGHV3-11P01762 117 aa15.92■□□□□ 0.14
VPS28-209ENST00000528142 KRTAP1-1Q07627 177 aa15.92■□□□□ 0.14
VPS28-209ENST00000528142 TMEM75Q8N9X5 138 aa15.92■□□□□ 0.14
VPS28-209ENST00000528142 NUDT10Q8NFP7 164 aa15.92■□□□□ 0.14
VPS28-209ENST00000528142 NUDT11Q96G61 164 aa15.92■□□□□ 0.14
VPS28-209ENST00000528142 MYO9AB2RTY4 2548 aa15.92■□□□□ 0.14
VPS28-209ENST00000528142 UBE2CO00762 179 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 PSMB8P28062 276 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 TMEM183AQ8IXX5 376 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 ARL6IP6Q8N6S5 226 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 OR4X2Q8NGF9 303 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 SMIM27A0A1W2PRY6 76 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 ZNF705GA8MUZ8 300 aaPredicted RBP15.91■□□□□ 0.14
VPS28-209ENST00000528142 NDUFA4O00483 81 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 ACTL10Q5JWF8 245 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 SERTAD4Q9NUC0 356 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 NOTCH2Q04721 2471 aa15.91■□□□□ 0.14
VPS28-209ENST00000528142 ZNF207O43670 478 aaKnown RBP15.9■□□□□ 0.14
VPS28-209ENST00000528142 PRR27Q6MZM9 219 aa15.9■□□□□ 0.14
VPS28-209ENST00000528142 LINC00322Q6ZN03 302 aaPredicted RBP15.9■□□□□ 0.14
VPS28-209ENST00000528142 PRSS22Q9GZN4 317 aa15.9■□□□□ 0.14
VPS28-209ENST00000528142 ZNF702PQ9H963 129 aa15.9■□□□□ 0.14
VPS28-209ENST00000528142 ZNF331Q9NQX6 463 aaPredicted RBP15.9■□□□□ 0.14
VPS28-209ENST00000528142 IGHV3-66A0A0C4DH42 116 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 TMEM89A2RUT3 159 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 K7EQM0 130 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 GATCO43716 136 aaKnown RBP15.89■□□□□ 0.13
VPS28-209ENST00000528142 FABP9Q0Z7S8 132 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 PSG3Q16557 428 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 UNQ9165/PRO28630Q6UXU0 137 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 PRNTQ86SH4 94 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 ZNF492Q9P255 531 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 OTOGQ6ZRI0 2925 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 ACANP16112 2415 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 C19orf71A6NCJ1 209 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 ZNF785A8K8V0 405 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 Q71RC1 249 aaPredicted RBP15.89■□□□□ 0.13
VPS28-209ENST00000528142 GRAMD2BQ96HH9 432 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 NPFFR1Q9GZQ6 430 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 PSG8Q9UQ74 426 aa15.89■□□□□ 0.13
VPS28-209ENST00000528142 IGHV3OR16-13A0A075B7E8 117 aa15.88■□□□□ 0.13
VPS28-209ENST00000528142 IGHV3-74A0A0B4J1X5 117 aa15.88■□□□□ 0.13
VPS28-209ENST00000528142 SERTM2A0A1B0GWG4 89 aa15.88■□□□□ 0.13
VPS28-209ENST00000528142 CA1P00915 261 aaPredicted RBP15.88■□□□□ 0.13
VPS28-209ENST00000528142 CSN1S1P47710 185 aa15.88■□□□□ 0.13
VPS28-209ENST00000528142 NDUFA6P56556 154 aa15.88■□□□□ 0.13
VPS28-209ENST00000528142 SMUG1Q53HV7 270 aa15.88■□□□□ 0.13
VPS28-209ENST00000528142 C10orf99Q6UWK7 81 aa15.88■□□□□ 0.13
VPS28-209ENST00000528142 ZFP30Q9Y2G7 519 aa15.88■□□□□ 0.13
VPS28-209ENST00000528142 IGHV3-49A0A0A0MS15 119 aa15.87■□□□□ 0.13
VPS28-209ENST00000528142 PRB4P10163 310 aaPredicted RBP15.87■□□□□ 0.13
VPS28-209ENST00000528142 FAM209BQ5JX69 171 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms