RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 BPIFA4PQ86YQ2 179 aa15.08■□□□□ 0
VPS28-203ENST00000524521 LYSTQ99698 3801 aa15.08■□□□□ 0
VPS28-203ENST00000524521 CXCL3P19876 107 aa15.07■□□□□ 0
VPS28-203ENST00000524521 FGF7P21781 194 aa15.07■□□□□ 0
VPS28-203ENST00000524521 RPL29P47914 159 aaKnown RBP15.07■□□□□ 0
VPS28-203ENST00000524521 CNN1P51911 297 aaKnown RBP15.07■□□□□ 0
VPS28-203ENST00000524521 PSG3Q16557 428 aa15.07■□□□□ 0
VPS28-203ENST00000524521 MORN5Q5VZ52 161 aa15.07■□□□□ 0
VPS28-203ENST00000524521 OR1L4Q8NGR5 311 aa15.07■□□□□ 0
VPS28-203ENST00000524521 LINC00476Q8WZB0 136 aa15.07■□□□□ 0
VPS28-203ENST00000524521 NEU1Q99519 415 aa15.07■□□□□ 0
VPS28-203ENST00000524521 SLC25A31Q9H0C2 315 aa15.07■□□□□ 0
VPS28-203ENST00000524521 OR5AC2Q9NZP5 309 aa15.07■□□□□ 0
VPS28-203ENST00000524521 A8MTW9 85 aa15.06■□□□□ 0
VPS28-203ENST00000524521 ZNF705FA8MVS1 300 aaPredicted RBP15.06■□□□□ 0
VPS28-203ENST00000524521 H0YIZ8 118 aa15.06■□□□□ 0
VPS28-203ENST00000524521 H2BFSP57053 126 aa15.06■□□□□ 0
VPS28-203ENST00000524521 B2MP61769 119 aa15.06■□□□□ 0
VPS28-203ENST00000524521 OPCMLQ14982 345 aa15.06■□□□□ 0
VPS28-203ENST00000524521 AMTNQ6UX39 209 aa15.06■□□□□ 0
VPS28-203ENST00000524521 SLC39A9Q9NUM3 307 aa15.06■□□□□ 0
VPS28-203ENST00000524521 GOLT1BQ9Y3E0 138 aa15.06■□□□□ 0
VPS28-203ENST00000524521 SMIM9A6NGZ8 99 aa15.05■□□□□ -0
VPS28-203ENST00000524521 OR5C1Q8NGR4 320 aa15.05■□□□□ -0
VPS28-203ENST00000524521 C2CD4CQ8TF44 421 aa15.05■□□□□ -0
VPS28-203ENST00000524521 PFDN5Q99471 154 aa15.05■□□□□ -0
VPS28-203ENST00000524521 CELA1Q9UNI1 258 aa15.05■□□□□ -0
VPS28-203ENST00000524521 TRAV5A0A0B4J249 113 aa15.04■□□□□ -0
VPS28-203ENST00000524521 C11orf94C9JXX5 98 aa15.04■□□□□ -0
VPS28-203ENST00000524521 H3BTX0 84 aa15.04■□□□□ -0
VPS28-203ENST00000524521 PRB4P10163 310 aaPredicted RBP15.04■□□□□ -0
VPS28-203ENST00000524521 EMP1P54849 157 aa15.04■□□□□ -0
VPS28-203ENST00000524521 LCN15Q6UWW0 184 aa15.04■□□□□ -0
VPS28-203ENST00000524521 Q6ZTC4 211 aa15.04■□□□□ -0
VPS28-203ENST00000524521 C1orf158Q8N1D5 194 aa15.04■□□□□ -0
VPS28-203ENST00000524521 OR11H7Q8NGC8 314 aa15.04■□□□□ -0
VPS28-203ENST00000524521 CHAC2Q8WUX2 184 aa15.04■□□□□ -0
VPS28-203ENST00000524521 PPP1R1CQ8WVI7 109 aa15.04■□□□□ -0
VPS28-203ENST00000524521 PXMP4Q9Y6I8 212 aa15.04■□□□□ -0
VPS28-203ENST00000524521 SACSQ9NZJ4 4579 aa15.04■□□□□ -0
VPS28-203ENST00000524521 RYR2Q92736 4967 aa15.03■□□□□ -0
VPS28-203ENST00000524521 M0R2Z0 102 aa15.03■□□□□ -0
VPS28-203ENST00000524521 MPDU1O75352 247 aa15.03■□□□□ -0
VPS28-203ENST00000524521 CXCL2P19875 107 aa15.03■□□□□ -0
VPS28-203ENST00000524521 RHOBP62745 196 aa15.03■□□□□ -0
VPS28-203ENST00000524521 HIST1H1AQ02539 215 aaPredicted RBP15.03■□□□□ -0
VPS28-203ENST00000524521 SPINK13Q1W4C9 94 aa15.03■□□□□ -0
VPS28-203ENST00000524521 ZNF767PQ75MW2 155 aa15.03■□□□□ -0
VPS28-203ENST00000524521 OR8A1Q8NGG7 326 aa15.03■□□□□ -0
VPS28-203ENST00000524521 RPUSD4Q96CM3 377 aaKnown RBP15.03■□□□□ -0
VPS28-203ENST00000524521 IGF2BP2-AS1Q96M15 143 aa15.03■□□□□ -0
VPS28-203ENST00000524521 SLC50A1Q9BRV3 221 aa15.03■□□□□ -0
VPS28-203ENST00000524521 ZNF331Q9NQX6 463 aaPredicted RBP15.03■□□□□ -0
VPS28-203ENST00000524521 RFNGQ9Y644 331 aa15.03■□□□□ -0
VPS28-203ENST00000524521 IGLL5B9A064 214 aa15.02■□□□□ -0
VPS28-203ENST00000524521 AMBPP02760 352 aa15.02■□□□□ -0
VPS28-203ENST00000524521 CLINT1Q14677 625 aa15.02■□□□□ -0
VPS28-203ENST00000524521 THAP6Q8TBB0 222 aa15.02■□□□□ -0
VPS28-203ENST00000524521 TMEM208Q9BTX3 173 aa15.02■□□□□ -0
VPS28-203ENST00000524521 PPP1R14DQ9NXH3 145 aa15.02■□□□□ -0
VPS28-203ENST00000524521 TRAV10A0A0B4J240 114 aa15.01□□□□□ -0.01
VPS28-203ENST00000524521 TMEM189A5PLL7 270 aa15.01□□□□□ -0.01
VPS28-203ENST00000524521 H3BQ15 152 aa15.01□□□□□ -0.01
VPS28-203ENST00000524521 HBE1P02100 147 aa15.01□□□□□ -0.01
VPS28-203ENST00000524521 C12orf74Q32Q52 190 aa15.01□□□□□ -0.01
VPS28-203ENST00000524521 RNF126Q9BV68 326 aa15.01□□□□□ -0.01
VPS28-203ENST00000524521 NPCDR1Q9BY65 106 aa15.01□□□□□ -0.01
VPS28-203ENST00000524521 SLC17A3O00476 420 aa15□□□□□ -0.01
VPS28-203ENST00000524521 MPC2O95563 127 aa15□□□□□ -0.01
VPS28-203ENST00000524521 SPART-AS1P0CW21 52 aa15□□□□□ -0.01
VPS28-203ENST00000524521 IGLC2P0DOY2 106 aa15□□□□□ -0.01
VPS28-203ENST00000524521 RRN3P1Q2M238 152 aa14.99□□□□□ -0.01
VPS28-203ENST00000524521 SAT2Q96F10 170 aaPredicted RBP14.99□□□□□ -0.01
VPS28-203ENST00000524521 TRAV12-2A0A075B6T6 113 aa14.98□□□□□ -0.01
VPS28-203ENST00000524521 LOC102723971A0A1B0GUV8 181 aa14.98□□□□□ -0.01
VPS28-203ENST00000524521 BOLA2-SMG1P6H3BVE0 249 aa14.98□□□□□ -0.01
VPS28-203ENST00000524521 CRXO43186 299 aaPredicted RBP14.98□□□□□ -0.01
VPS28-203ENST00000524521 INSP01308 110 aa14.98□□□□□ -0.01
VPS28-203ENST00000524521 PET100P0DJ07 73 aa14.98□□□□□ -0.01
VPS28-203ENST00000524521 GUK1Q16774 197 aa14.98□□□□□ -0.01
VPS28-203ENST00000524521 GCSAMLQ5JQS6 135 aa14.98□□□□□ -0.01
VPS28-203ENST00000524521 BAP18Q8IXM2 172 aa14.98□□□□□ -0.01
VPS28-203ENST00000524521 PLECQ15149 4684 aaKnown RBP14.97□□□□□ -0.01
VPS28-203ENST00000524521 TCTAP57738 103 aa14.97□□□□□ -0.01
VPS28-203ENST00000524521 LGALS9CQ6DKI2 356 aa14.97□□□□□ -0.01
VPS28-203ENST00000524521 WDR61Q9GZS3 305 aaKnown RBP14.97□□□□□ -0.01
VPS28-203ENST00000524521 ZNF586Q9NXT0 402 aa14.97□□□□□ -0.01
VPS28-203ENST00000524521 ALG5Q9Y673 324 aa14.97□□□□□ -0.01
VPS28-203ENST00000524521 DNAH1Q9P2D7 4330 aa14.96□□□□□ -0.01
VPS28-203ENST00000524521 DEFB131BA0A096LNP1 70 aa14.96□□□□□ -0.01
VPS28-203ENST00000524521 PRAC2D3DTV9 90 aa14.96□□□□□ -0.01
VPS28-203ENST00000524521 FAM222AQ5U5X8 452 aa14.96□□□□□ -0.01
VPS28-203ENST00000524521 OR10J6PQ8NGY7 276 aa14.96□□□□□ -0.01
VPS28-203ENST00000524521 APLNQ9ULZ1 77 aa14.96□□□□□ -0.01
VPS28-203ENST00000524521 HSPB11Q9Y547 144 aa14.96□□□□□ -0.01
VPS28-203ENST00000524521 ZNF705GA8MUZ8 300 aaPredicted RBP14.95□□□□□ -0.02
VPS28-203ENST00000524521 PTTG1O95997 202 aa14.95□□□□□ -0.02
VPS28-203ENST00000524521 PRM2P04554 102 aa14.95□□□□□ -0.02
VPS28-203ENST00000524521 RPL12P30050 165 aaKnown RBP14.95□□□□□ -0.02
VPS28-203ENST00000524521 ATP5SQ99766 215 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms