RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TMEM14BQ9NUH8 114 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 HIVEP2P31629 2446 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 FABP5P3A8MUU1 101 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 COX6B1P14854 86 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 ZNF56Q15929 161 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 FOXC2Q99958 501 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 IGLC2P0DOY2 106 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 IGLC3P0DOY3 106 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 STPG4Q8N801 248 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 GTSF1LQ9H1H1 148 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 RAB9AP51151 201 aa9.46□□□□□ -0.89
SYNPO-204ENST00000519664 WT1-ASQ06250 92 aa9.46□□□□□ -0.89
SYNPO-204ENST00000519664 Q8NFD4 153 aa9.46□□□□□ -0.89
SYNPO-204ENST00000519664 C11orf44Q8N8P7 122 aa9.46□□□□□ -0.89
SYNPO-204ENST00000519664 COL4A4P53420 1690 aaPredicted RBP9.46□□□□□ -0.89
SYNPO-204ENST00000519664 JMJD1CQ15652 2540 aa9.46□□□□□ -0.89
SYNPO-204ENST00000519664 KIAA1549LQ6ZVL6 1849 aa9.46□□□□□ -0.89
SYNPO-204ENST00000519664 ZFYVE26Q68DK2 2539 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 CD5LO43866 347 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 TYMSP04818 313 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 RNASE4P34096 147 aaKnown RBP9.46□□□□□ -0.9
SYNPO-204ENST00000519664 PVRIGQ6DKI7 326 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 SFTA2Q6UW10 78 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 TEX43Q6ZNM6 134 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 VMO1Q7Z5L0 202 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 LSM4Q9Y4Z0 139 aaKnown RBP9.46□□□□□ -0.9
SYNPO-204ENST00000519664 A0A1B0GWB2 263 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 GGTLC3B5MD39 225 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 CCL25O15444 150 aa9.46□□□□□ -0.9
SYNPO-204ENST00000519664 DUX5Q96PT3 197 aa9.45□□□□□ -0.9
SYNPO-204ENST00000519664 SMAD7O15105 426 aaKnown RBP9.45□□□□□ -0.9
SYNPO-204ENST00000519664 IGLV1-44P01699 117 aa9.45□□□□□ -0.9
SYNPO-204ENST00000519664 CACNG7P62955 275 aa9.45□□□□□ -0.9
SYNPO-204ENST00000519664 PRUNE2Q8WUY3 3088 aa9.45□□□□□ -0.9
SYNPO-204ENST00000519664 C5orf64Q2M2E5 130 aa9.45□□□□□ -0.9
SYNPO-204ENST00000519664 NUP37Q8NFH4 326 aa9.45□□□□□ -0.9
SYNPO-204ENST00000519664 DDB2Q92466 427 aa9.45□□□□□ -0.9
SYNPO-204ENST00000519664 NAA38Q9BRA0 125 aaKnown RBP9.45□□□□□ -0.9
SYNPO-204ENST00000519664 NAV3Q8IVL0 2385 aa9.45□□□□□ -0.9
SYNPO-204ENST00000519664 IGLV3-9A0A075B6K5 115 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 LTBP2Q14767 1821 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 TMEM238LA0A1B0GVL6 79 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 A6NJY4 79 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 CSTL1Q9H114 145 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 MS4A6AQ9H2W1 248 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 TMEM170BQ5T4T1 132 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 Q6ZWC4 215 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 hDV102S1A0JD36 115 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 LEPP41159 167 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 ZNF329Q86UD4 541 aa9.44□□□□□ -0.9
SYNPO-204ENST00000519664 ZNF256Q9Y2P7 627 aaPredicted RBP9.44□□□□□ -0.9
SYNPO-204ENST00000519664 IGKV3OR2-268A0A0C4DH90 116 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 NDUFA3O95167 84 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 LOXP28300 417 aaPredicted RBP9.43□□□□□ -0.9
SYNPO-204ENST00000519664 Q0VG73 95 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 TRGV9Q99603 122 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 LYZL1Q6UWQ5 148 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 NDUFA4L2Q9NRX3 87 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 DKK4Q9UBT3 224 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 D6R8Y8 96 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 SMKR1H3BMG3 65 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 CEACAM4O75871 244 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 GRNP28799 593 aaKnown RBP9.43□□□□□ -0.9
SYNPO-204ENST00000519664 Q6ZPA2 131 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 OR4X2Q8NGF9 303 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 BPESC1Q9GZL8 116 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 DOPEY1Q5JWR5 2465 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 OR11H12B2RN74 326 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 OR11H1Q8NG94 326 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 OR11H2Q8NH07 326 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 KIR2DL4Q99706 377 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 ANAPC13Q9BS18 74 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 VCX2Q9H322 139 aa9.43□□□□□ -0.9
SYNPO-204ENST00000519664 ABCA12Q86UK0 2595 aa9.42□□□□□ -0.9
SYNPO-204ENST00000519664 TMEM155Q4W5P6 130 aa9.42□□□□□ -0.9
SYNPO-204ENST00000519664 FAM169BQ8N8A8 192 aa9.42□□□□□ -0.9
SYNPO-204ENST00000519664 SOX21Q9Y651 276 aaPredicted RBP9.42□□□□□ -0.9
SYNPO-204ENST00000519664 FAM181BA6NEQ2 426 aa9.42□□□□□ -0.9
SYNPO-204ENST00000519664 A0A0G2JLM5 398 aa9.42□□□□□ -0.9
SYNPO-204ENST00000519664 ASIPP42127 132 aa9.42□□□□□ -0.9
SYNPO-204ENST00000519664 SNRPD3P62318 126 aaKnown RBP9.42□□□□□ -0.9
SYNPO-204ENST00000519664 SSBP2P81877 361 aaPredicted RBP9.42□□□□□ -0.9
SYNPO-204ENST00000519664 PSMG4Q5JS54 123 aa9.42□□□□□ -0.9
SYNPO-204ENST00000519664 SCGB3A1Q96QR1 104 aa9.42□□□□□ -0.9
SYNPO-204ENST00000519664 PSMB11A5LHX3 300 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 NDUFS7O75251 213 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 OR5AN1Q8NGI8 311 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 ARHGAP32A7KAX9 2087 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 A0A1W2PRX2 142 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 GNLYP22749 145 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 GATA4P43694 442 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 CHTOPQ9Y3Y2 248 aaKnown RBP9.41□□□□□ -0.9
SYNPO-204ENST00000519664 IGHV2-70DA0A0C4DH43 119 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 Q6AWC8 147 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 BEX4Q9NWD9 120 aaPredicted RBP9.41□□□□□ -0.9
SYNPO-204ENST00000519664 ARMS2P0C7Q2 107 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 HSD52Q0P140 79 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 AMN1Q8IY45 258 aa9.41□□□□□ -0.9
SYNPO-204ENST00000519664 CD7P09564 240 aa9.4□□□□□ -0.9
SYNPO-204ENST00000519664 CRIP3Q6Q6R5 217 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms