RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PRAF2O60831 178 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 RLN2P04090 185 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 CXCL3P19876 107 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 S100A7P31151 101 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 DEFA1P59665 94 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 DEFA3P59666 94 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 PRR20EP86478 221 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 PRR20CP86479 221 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 PRR20DP86480 221 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 PRR20BP86481 221 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 PRR20AP86496 221 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 RAB31Q13636 194 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 PSG3Q16557 428 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 SPINK13Q1W4C9 94 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 AMTNQ6UX39 209 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 C1orf158Q8N1D5 194 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 LINC00476Q8WZB0 136 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 RNF126Q9BV68 326 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 SLC39A9Q9NUM3 307 aa8.27□□□□□ -1.09
VCAN-212ENST00000515397 TRAV12-2A0A075B6T6 113 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 IGLL5B9A064 214 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 PRAC2D3DTV9 90 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 SLC17A3O00476 420 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 B2MP61769 119 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 RHOBP62745 196 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 HBG1P69891 147 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 HBG2P69892 147 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 HIST1H1AQ02539 215 aaPredicted RBP8.26□□□□□ -1.09
VCAN-212ENST00000515397 VWC2Q2TAL6 325 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 C12orf74Q32Q52 190 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 ZNF705AQ6ZN79 300 aaPredicted RBP8.26□□□□□ -1.09
VCAN-212ENST00000515397 Q6ZRG5 221 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 OR11H7Q8NGC8 314 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 OR5C1Q8NGR4 320 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 PPP1R1CQ8WVI7 109 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 NMES1Q9C002 83 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 PXMP4Q9Y6I8 212 aa8.26□□□□□ -1.09
VCAN-212ENST00000515397 A0A087X0K7 114 aa8.25□□□□□ -1.09
VCAN-212ENST00000515397 ZNF705GA8MUZ8 300 aaPredicted RBP8.25□□□□□ -1.09
VCAN-212ENST00000515397 E5RGE8 158 aa8.25□□□□□ -1.09
VCAN-212ENST00000515397 RPL29P47914 159 aaKnown RBP8.25□□□□□ -1.09
VCAN-212ENST00000515397 ATP6V1FQ16864 119 aa8.25□□□□□ -1.09
VCAN-212ENST00000515397 PXDC1Q5TGL8 231 aa8.25□□□□□ -1.09
VCAN-212ENST00000515397 SAMD13Q5VXD3 122 aa8.25□□□□□ -1.09
VCAN-212ENST00000515397 SPATA31B1PQ5VZV4 182 aa8.25□□□□□ -1.09
VCAN-212ENST00000515397 BPIFA4PQ86YQ2 179 aa8.25□□□□□ -1.09
VCAN-212ENST00000515397 BAP18Q8IXM2 172 aa8.25□□□□□ -1.09
VCAN-212ENST00000515397 OR8A1Q8NGG7 326 aa8.25□□□□□ -1.09
VCAN-212ENST00000515397 RPUSD4Q96CM3 377 aaKnown RBP8.25□□□□□ -1.09
VCAN-212ENST00000515397 PARD6GQ9BYG4 376 aaPredicted RBP8.25□□□□□ -1.09
VCAN-212ENST00000515397 CRXO43186 299 aaPredicted RBP8.24□□□□□ -1.09
VCAN-212ENST00000515397 DUSP14O95147 198 aaKnown RBP8.24□□□□□ -1.09
VCAN-212ENST00000515397 KIR3DS1Q14943 382 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 S100A7AQ86SG5 101 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 OR1L4Q8NGR5 311 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 C2CD4CQ8TF44 421 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 CLUHP3Q96NS8 147 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 SMIM3Q9BZL3 60 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 SLC25A31Q9H0C2 315 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 ZNF331Q9NQX6 463 aaPredicted RBP8.24□□□□□ -1.09
VCAN-212ENST00000515397 PPP1R14DQ9NXH3 145 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 ZNF586Q9NXT0 402 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 RFNGQ9Y644 331 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 ALG5Q9Y673 324 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 KMT2AQ03164 3969 aa8.24□□□□□ -1.09
VCAN-212ENST00000515397 A8MTW9 85 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 EIF3GO75821 320 aaKnown RBP eCLIP8.23□□□□□ -1.09
VCAN-212ENST00000515397 MPC2O95563 127 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 IGLC2P0DOY2 106 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 PYYP10082 97 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 HTN1P15515 57 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 AZU1P20160 251 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 CYCSP99999 105 aaKnown RBP8.23□□□□□ -1.09
VCAN-212ENST00000515397 RPP25LQ8N5L8 163 aaKnown RBP8.23□□□□□ -1.09
VCAN-212ENST00000515397 SAT2Q96F10 170 aaPredicted RBP8.23□□□□□ -1.09
VCAN-212ENST00000515397 IGF2BP2-AS1Q96M15 143 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 NEU1Q99519 415 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 TMEM208Q9BTX3 173 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 NPCDR1Q9BY65 106 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 HRH4Q9H3N8 390 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 GOLT1BQ9Y3E0 138 aa8.23□□□□□ -1.09
VCAN-212ENST00000515397 LOC102723971A0A1B0GUV8 181 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 J3KRW8 73 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 HBE1P02100 147 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 FCN2Q15485 313 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 FAM222AQ5U5X8 452 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 LCN15Q6UWW0 184 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 MIR17HGQ75NE6 70 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 BLNKQ8WV28 456 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 WFDC1Q9HC57 220 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 MBD2Q9UBB5 411 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 APLNQ9ULZ1 77 aa8.22□□□□□ -1.09
VCAN-212ENST00000515397 DEFB131BA0A096LNP1 70 aa8.21□□□□□ -1.1
VCAN-212ENST00000515397 TRAV10A0A0B4J240 114 aa8.21□□□□□ -1.1
VCAN-212ENST00000515397 M0R3E3 92 aa8.21□□□□□ -1.1
VCAN-212ENST00000515397 SPART-AS1P0CW21 52 aa8.21□□□□□ -1.1
VCAN-212ENST00000515397 HTN3P15516 51 aa8.21□□□□□ -1.1
VCAN-212ENST00000515397 ERCC8Q13216 396 aa8.21□□□□□ -1.1
VCAN-212ENST00000515397 RRN3P1Q2M238 152 aa8.21□□□□□ -1.1
VCAN-212ENST00000515397 CHAC2Q8WUX2 184 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms