RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 CMC4P56277 68 aaPredicted RBP2.55□□□□□ -2
NUP54-212ENST00000513248 AP3S2P59780 193 aa2.55□□□□□ -2
NUP54-212ENST00000513248 PRCDQ00LT1 54 aa2.55□□□□□ -2
NUP54-212ENST00000513248 SSBP1Q04837 148 aaKnown RBP2.55□□□□□ -2
NUP54-212ENST00000513248 WT1-ASQ06250 92 aa2.55□□□□□ -2
NUP54-212ENST00000513248 ASAH1Q13510 395 aa2.55□□□□□ -2
NUP54-212ENST00000513248 SPCS2Q15005 226 aa2.55□□□□□ -2
NUP54-212ENST00000513248 PRR4Q16378 134 aa2.55□□□□□ -2
NUP54-212ENST00000513248 LCE1CQ5T751 118 aa2.55□□□□□ -2
NUP54-212ENST00000513248 LCE1BQ5T7P3 118 aa2.55□□□□□ -2
NUP54-212ENST00000513248 UFSP1Q6NVU6 142 aa2.55□□□□□ -2
NUP54-212ENST00000513248 UNQ9165/PRO28630Q6UXU0 137 aa2.55□□□□□ -2
NUP54-212ENST00000513248 TMED4Q7Z7H5 227 aa2.55□□□□□ -2
NUP54-212ENST00000513248 KRTAP11-1Q8IUC1 163 aa2.55□□□□□ -2
NUP54-212ENST00000513248 TMEM61Q8N0U2 210 aa2.55□□□□□ -2
NUP54-212ENST00000513248 CENPSQ8N2Z9 138 aa2.55□□□□□ -2
NUP54-212ENST00000513248 OR13C8Q8NGS7 320 aa2.55□□□□□ -2
NUP54-212ENST00000513248 OR1P1Q8NH06 330 aa2.55□□□□□ -2
NUP54-212ENST00000513248 TERB2Q8NHR7 220 aa2.55□□□□□ -2
NUP54-212ENST00000513248 ZNF502Q8TBZ5 544 aa2.55□□□□□ -2
NUP54-212ENST00000513248 TP53RKQ96S44 253 aa2.55□□□□□ -2
NUP54-212ENST00000513248 PRRT1Q99946 306 aa2.55□□□□□ -2
NUP54-212ENST00000513248 GGTLC1Q9BX51 225 aa2.55□□□□□ -2
NUP54-212ENST00000513248 WFDC10AQ9H1F0 79 aa2.55□□□□□ -2
NUP54-212ENST00000513248 TMEM231Q9H6L2 316 aa2.55□□□□□ -2
NUP54-212ENST00000513248 RETNQ9HD89 108 aa2.55□□□□□ -2
NUP54-212ENST00000513248 DAZ1Q9NQZ3 744 aaKnown RBP2.55□□□□□ -2
NUP54-212ENST00000513248 NDUFA4L2Q9NRX3 87 aa2.55□□□□□ -2
NUP54-212ENST00000513248 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.55□□□□□ -2
NUP54-212ENST00000513248 TMEM14BQ9NUH8 114 aa2.55□□□□□ -2
NUP54-212ENST00000513248 SIGLEC8Q9NYZ4 499 aa2.55□□□□□ -2
NUP54-212ENST00000513248 CCDC59Q9P031 241 aaKnown RBP2.55□□□□□ -2
NUP54-212ENST00000513248 RABL2AQ9UBK7 228 aaPredicted RBP2.55□□□□□ -2
NUP54-212ENST00000513248 MTFP1Q9UDX5 166 aa2.55□□□□□ -2
NUP54-212ENST00000513248 RABAC1Q9UI14 185 aa2.55□□□□□ -2
NUP54-212ENST00000513248 ANAPC10Q9UM13 185 aa2.55□□□□□ -2
NUP54-212ENST00000513248 RABL2BQ9UNT1 228 aa2.55□□□□□ -2
NUP54-212ENST00000513248 TENM1Q9UKZ4 2725 aa2.55□□□□□ -2
NUP54-212ENST00000513248 IGHV3OR16-13A0A075B7E8 117 aa2.54□□□□□ -2
NUP54-212ENST00000513248 TRAV14DV4A0A0A6YYC5 116 aa2.54□□□□□ -2
NUP54-212ENST00000513248 IGHV3-74A0A0B4J1X5 117 aa2.54□□□□□ -2
NUP54-212ENST00000513248 PIGBOS1A0A0B4J2F0 54 aa2.54□□□□□ -2
NUP54-212ENST00000513248 IGHV3-66A0A0C4DH42 116 aa2.54□□□□□ -2
NUP54-212ENST00000513248 LINC00854A0A1B0GVQ3 168 aa2.54□□□□□ -2
NUP54-212ENST00000513248 A0A1B0GW64 132 aa2.54□□□□□ -2
NUP54-212ENST00000513248 TMEM213A2RRL7 107 aa2.54□□□□□ -2
NUP54-212ENST00000513248 A8MWP6 167 aa2.54□□□□□ -2
NUP54-212ENST00000513248 K7EMT4 169 aa2.54□□□□□ -2
NUP54-212ENST00000513248 NDUFA4O00483 81 aa2.54□□□□□ -2
NUP54-212ENST00000513248 IFNA10P01566 189 aa2.54□□□□□ -2
NUP54-212ENST00000513248 IFNA4P05014 189 aa2.54□□□□□ -2
NUP54-212ENST00000513248 OR5AC1P0C628 307 aa2.54□□□□□ -2
NUP54-212ENST00000513248 SULT1A3P0DMM9 295 aa2.54□□□□□ -2
NUP54-212ENST00000513248 SULT1A4P0DMN0 295 aa2.54□□□□□ -2
NUP54-212ENST00000513248 NPPCP23582 126 aa2.54□□□□□ -2
NUP54-212ENST00000513248 HTR2BP41595 481 aa2.54□□□□□ -2
NUP54-212ENST00000513248 SPCS3P61009 180 aa2.54□□□□□ -2
NUP54-212ENST00000513248 RND3P61587 244 aa2.54□□□□□ -2
NUP54-212ENST00000513248 SURF2Q15527 256 aaPredicted RBP2.54□□□□□ -2
NUP54-212ENST00000513248 TRIQKQ629K1 86 aa2.54□□□□□ -2
NUP54-212ENST00000513248 IL34Q6ZMJ4 242 aa2.54□□□□□ -2
NUP54-212ENST00000513248 TCF24Q7RTU0 167 aa2.54□□□□□ -2
NUP54-212ENST00000513248 LGI3Q8N145 548 aa2.54□□□□□ -2
NUP54-212ENST00000513248 TOMM5Q8N4H5 51 aa2.54□□□□□ -2
NUP54-212ENST00000513248 OR51S1Q8NGJ8 323 aa2.54□□□□□ -2
NUP54-212ENST00000513248 OR4C16Q8NGL9 310 aa2.54□□□□□ -2
NUP54-212ENST00000513248 OR1S1Q8NH92 325 aa2.54□□□□□ -2
NUP54-212ENST00000513248 Q8WTZ3 238 aa2.54□□□□□ -2
NUP54-212ENST00000513248 SMIM4Q8WVI0 70 aa2.54□□□□□ -2
NUP54-212ENST00000513248 RBPMSQ93062 196 aaKnown RBP2.54□□□□□ -2
NUP54-212ENST00000513248 PPP1R14BQ96C90 147 aa2.54□□□□□ -2
NUP54-212ENST00000513248 SEC22AQ96IW7 307 aa2.54□□□□□ -2
NUP54-212ENST00000513248 TXN2Q99757 166 aa2.54□□□□□ -2
NUP54-212ENST00000513248 BCL7BQ9BQE9 202 aa2.54□□□□□ -2
NUP54-212ENST00000513248 TM2D3Q9BRN9 247 aa2.54□□□□□ -2
NUP54-212ENST00000513248 CHRDL1Q9BU40 450 aa2.54□□□□□ -2
NUP54-212ENST00000513248 RHPN1-AS1Q9BWJ2 59 aa2.54□□□□□ -2
NUP54-212ENST00000513248 ZNF436Q9C0F3 470 aaPredicted RBP2.54□□□□□ -2
NUP54-212ENST00000513248 TMEM222Q9H0R3 208 aa2.54□□□□□ -2
NUP54-212ENST00000513248 MIXL1Q9H2W2 232 aa2.54□□□□□ -2
NUP54-212ENST00000513248 NAA60Q9H7X0 242 aa2.54□□□□□ -2
NUP54-212ENST00000513248 ANAPC11Q9NYG5 84 aa2.54□□□□□ -2
NUP54-212ENST00000513248 CACFD1Q9UGQ2 172 aa2.54□□□□□ -2
NUP54-212ENST00000513248 UBR4Q5T4S7 5183 aa2.54□□□□□ -2
NUP54-212ENST00000513248 HERC2O95714 4834 aa2.53□□□□□ -2
NUP54-212ENST00000513248 IGLV8-61A0A075B6I0 122 aa2.53□□□□□ -2
NUP54-212ENST00000513248 TRAV30A0A087WSZ9 112 aa2.53□□□□□ -2
NUP54-212ENST00000513248 IGHV7-4-1A0A0J9YVY3 117 aa2.53□□□□□ -2
NUP54-212ENST00000513248 ANKRD20A5PA0PJZ0 165 aa2.53□□□□□ -2
NUP54-212ENST00000513248 RBMY1BA6NDE4 496 aaKnown RBP2.53□□□□□ -2
NUP54-212ENST00000513248 RBMY1EA6NEQ0 496 aaKnown RBP2.53□□□□□ -2
NUP54-212ENST00000513248 CRYM-AS1A6NIL9 109 aa2.53□□□□□ -2
NUP54-212ENST00000513248 CENPXA8MT69 81 aa2.53□□□□□ -2
NUP54-212ENST00000513248 H3BMQ9 156 aa2.53□□□□□ -2
NUP54-212ENST00000513248 H3BTX0 84 aa2.53□□□□□ -2
NUP54-212ENST00000513248 K7EIM0 57 aa2.53□□□□□ -2
NUP54-212ENST00000513248 WRBO00258 174 aa2.53□□□□□ -2
NUP54-212ENST00000513248 IGKV1-39P01597 117 aa2.53□□□□□ -2
NUP54-212ENST00000513248 IGKV1-5P01602 117 aa2.53□□□□□ -2
NUP54-212ENST00000513248 CD74P04233 296 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms