RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 EBLN2Q6P2I7 272 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 Q6ZVH6 145 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 FAM215AQ9Y5M1 114 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 PCNX1Q96RV3 2341 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 TRBV19A0A075B6N1 114 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 A0A0G2JLM5 398 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 A0A1W2PNU3 283 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 TMEM213A2RRL7 107 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 HAX1O00165 279 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 C5orf64Q2M2E5 130 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 IGF2BP2-AS1Q96M15 143 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 AKAP6Q13023 2319 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 ESDP10768 282 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 COL8A2P25067 703 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 ASIPP42127 132 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 PLA2G2CQ5R387 149 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 OR5A1Q8NGJ0 315 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 NBASA2RRP1 2371 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 GAGE12BA1L429 117 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 E7EQL1 145 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 LY6EQ16553 131 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 TMEM75Q8N9X5 138 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 GTF3C1Q12789 2109 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 GTSCR1Q86UQ5 136 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 EML5Q05BV3 1969 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 H7C2G1 150 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 SRSF1Q07955 248 aaKnown RBP eCLIP6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 EIF4EBP1Q13541 118 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 SAMD5Q5TGI4 173 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 BCL6BQ8N143 479 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 FAM167A-AS1Q96KT0 104 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 WDR87Q6ZQQ6 2873 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 LTAP01374 205 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 CEACAM8P31997 349 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 KIR3DS1Q14943 382 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 PATE2Q6UY27 113 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 C8orf49Q96NF6 230 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 KIR2DL4Q99706 377 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 VKORC1Q9BQB6 163 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 MRPL16Q9NX20 251 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 UCNP55089 124 aa6.73□□□□□ -1.33
LIMCH1-216ENST00000512820 WISP2O76076 250 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 IGLC1P0CG04 106 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 PDE6HQ13956 83 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 FAM74A4Q5TZK3 123 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 DGAT2L7PQ6IED9 249 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 SRSF8Q9BRL6 282 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 TMEM14CQ9P0S9 112 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 RAXQ9Y2V3 346 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 A0A1B0GWB2 263 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 IGLC7A0M8Q6 106 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 RPL13AP40429 203 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 C15orf32Q32M92 178 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 FAM104BQ5XKR9 115 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 FAM159AQ6UWV7 190 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 DKK4Q9UBT3 224 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 SMAD7O15105 426 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 MSMPQ1L6U9 139 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 ZC2HC1AQ96GY0 325 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 LGALS3P17931 250 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 MED12LQ86YW9 2145 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 SYT8Q8NBV8 401 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 CST9LQ9H4G1 147 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 SMPXQ9UHP9 88 aa6.72□□□□□ -1.33
LIMCH1-216ENST00000512820 LY6HO94772 140 aa6.71□□□□□ -1.33
LIMCH1-216ENST00000512820 CR1LQ2VPA4 569 aa6.71□□□□□ -1.33
LIMCH1-216ENST00000512820 TMEM170BQ5T4T1 132 aa6.71□□□□□ -1.33
LIMCH1-216ENST00000512820 WT1P19544 449 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 RNASE4P34096 147 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 FAM106AQ4KMX7 169 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 BVES-AS1Q5T3Y7 98 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 VMO1Q7Z5L0 202 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 ZNF503Q96F45 646 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 CHD3Q12873 2000 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 MED13Q9UHV7 2174 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 EML6Q6ZMW3 1958 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 PPP1R17O96001 155 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 THBDP07204 575 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 COX8AP10176 69 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 OCIAD2Q56VL3 154 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 UTF1Q5T230 341 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 IGFL3Q6UXB1 125 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 LAGE3Q14657 143 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 MALRD1Q5VYJ5 2156 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 TMEM158Q8WZ71 300 aa6.71□□□□□ -1.34
LIMCH1-216ENST00000512820 PCNX2A6NKB5 2137 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 PRSS46E5RG02 174 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 CCL25O15444 150 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 LINC00173Q6ZV60 143 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 ARL6IP6Q8N6S5 226 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 ZNF479Q96JC4 524 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 LRP4O75096 1905 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 H3BRN7 92 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 APOMO95445 188 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 ZNF56Q15929 161 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 LINC01559Q495D7 138 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 ZC2HC1BQ5TFG8 222 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 C17orf77Q96MU5 243 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 IGKV3-20P01619 116 aa6.7□□□□□ -1.34
LIMCH1-216ENST00000512820 IGHV3-11P01762 117 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms