RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 LOC105371242A0A075B767 164 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 PPIAL4CA0A0B4J2A2 164 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 CRXO43186 299 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 OR5AL1P0C617 328 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 PPIAL4GP0DN37 164 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 CRIP1P50238 77 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 RNF151Q2KHN1 245 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 LDLRAD2Q5SZI1 272 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 SELENOKQ9Y6D0 94 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 TRBV19A0A075B6N1 114 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 OR2T8A6NH00 312 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 SHISA9B4DS77 424 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 HAX1O00165 279 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 TIMM23O14925 209 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 PVRIGQ6DKI7 326 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 FA2HQ7L5A8 372 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 C8orf49Q96NF6 230 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 ONECUT1Q9UBC0 465 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 K7EIM0 57 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 NCR2O95944 276 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 LOXL1Q08397 574 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 RIGQ13278 110 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 BVES-AS1Q5T3Y7 98 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 LRBAP50851 2863 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 IGHV3OR16-8A0A075B7F1 116 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 HLA-DRB1P01911 266 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 ARF6P62330 175 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 OR8A1Q8NGG7 326 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 LINC01560Q8TB33 94 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 RELNP78509 3460 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 TMEM213A2RRL7 107 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 FAM231BA6NCW3 169 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 OVOL3O00110 214 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 RBPJQ06330 500 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 HES1Q14469 280 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 ZNF491Q8N8L2 437 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 HSPB8Q9UJY1 196 aa7.31□□□□□ -1.24
LIMCH1-215ENST00000512632 IGHV3-35A0A0C4DH35 117 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 TAX1BP3O14907 124 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 IGHV3-23P01764 117 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 IFI27P40305 119 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 PET117Q6UWS5 81 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 SIGLEC15Q6ZMC9 328 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 RNF125Q96EQ8 232 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 SHANK2-AS3Q9BTD1 123 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 IGFL4Q6B9Z1 124 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 TMEM14CQ9P0S9 112 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 IGHV2-70DA0A0C4DH43 119 aa7.3□□□□□ -1.24
LIMCH1-215ENST00000512632 K7EQM0 130 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 AMMECR1LQ6DCA0 310 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 AMN1Q8IY45 258 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 ZNF747Q9BV97 191 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 GNG7O60262 68 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 CT45A10P0DMU9 189 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 APOBEC3AP31941 199 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 LYZL1Q6UWQ5 148 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 SCRT2Q9NQ03 307 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 C1RLQ9NZP8 487 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 CSN1S1P47710 185 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 RBX1P62877 108 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 PSG3Q16557 428 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 WFDC3Q8IUB2 231 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 COL6A6A6NMZ7 2263 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 D6R8Y8 96 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 Q8NA96 180 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 TNFRSF14Q92956 283 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 ZNF414Q96IQ9 312 aa7.29□□□□□ -1.24
LIMCH1-215ENST00000512632 SMKR1H3BMG3 65 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 KLRD1Q13241 179 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 ATRXP46100 2492 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 IGKV2-40A0A087WW87 121 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 H3BRN7 92 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 IGKV2D-40P01614 121 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 CD3EP07766 207 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 UQCRFS1P47985 274 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 C12orf54Q6X4T0 127 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 OR10AG1Q8NH19 301 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 SPTAN1Q13813 2472 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 HOXB4P17483 251 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 Q8TAT8 98 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 MUC6Q6W4X9 2439 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 GPR183P32249 361 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 LINC01545Q5VT33 79 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 IGF2-ASQ6U949 168 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 DEFB125Q8N687 156 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 PTPRQQ9UMZ3 2332 aa7.28□□□□□ -1.24
LIMCH1-215ENST00000512632 TMEM189A5PLL7 270 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 NHLH1Q02575 133 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 ANKRD39Q53RE8 183 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 C16orf54Q6UWD8 224 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 AAMDCQ9H7C9 122 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 TRAV30A0A087WSZ9 112 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 B9A039 149 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 GRNP28799 593 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 TMEM75Q8N9X5 138 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 SIGLEC8Q9NYZ4 499 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 HLA-DMBP28068 263 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 PRELID3AQ96N28 172 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 NAA38Q9BRA0 125 aaKnown RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms