RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 SLC50A1Q9BRV3 221 aa8.43□□□□□ -1.06
LIMCH1-210ENST00000509454 SLC25A2Q9BXI2 301 aa8.43□□□□□ -1.06
LIMCH1-210ENST00000509454 CSTL1Q9H114 145 aa8.43□□□□□ -1.06
LIMCH1-210ENST00000509454 TGP01266 2768 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 AGRNO00468 2067 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 TRAV8-2A0A0B4J237 113 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 KIR2DL5BA0A0G2JN68 375 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 KIR2DL5BA0A0G2JPC4 375 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 KANTRA0A1W2PQU2 76 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 F6UB75 175 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 UBE2CO00762 179 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 MRPS12O15235 138 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 PFDN1O60925 122 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 PRB4P10163 310 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 M6PRP20645 277 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 HLA-DMBP28068 263 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 TAS2R45P59539 299 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 RAB2AP61019 212 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 FOXI2Q6ZQN5 318 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 KIR2DL5AQ8N109 375 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 OR10G4Q8NGN3 311 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 OR10G9Q8NGN4 311 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 OR10G7Q8NGN6 311 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 KIR2DL5BQ8NHK3 375 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 GNPNAT1Q96EK6 184 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 ST6GAL2Q96JF0 529 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 ARPC5LQ9BPX5 153 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 PAXXQ9BUH6 204 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 SH3BGRL3Q9H299 93 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 HRH4Q9H3N8 390 aa8.42□□□□□ -1.06
LIMCH1-210ENST00000509454 A0A0D9SG52 128 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 H3BQ15 152 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 SLC17A3O00476 420 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 EIF3GO75821 320 aaKnown RBP eCLIP8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 JTBO76095 146 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 OR10J4P0C629 311 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 IGLC2P0DOY2 106 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 HLA-DRB4P13762 266 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 CXCL2P19875 107 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 GUK1Q16774 197 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 KHDC3LQ587J8 217 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 TRPT1Q86TN4 253 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 OR2G3Q8NGZ4 309 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 PSMG3Q9BT73 122 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 OR51M1Q9H341 326 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 SAV1Q9H4B6 383 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 TMEM14CQ9P0S9 112 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 HLA-DRB4X5D2U9 266 aa8.41□□□□□ -1.06
LIMCH1-210ENST00000509454 HMSDA8MTL9 139 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 H3BMM0 161 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 MBP02144 154 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 HIST1H1EP10412 219 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 SPP1P10451 314 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 FXYD7P58549 80 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 NUTF2P61970 127 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 UBE2L3P68036 154 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 ZNF345Q14585 488 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 PSG3Q16557 428 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 GDF5OSQ5U4N7 250 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 MORN3Q6PF18 240 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 TCTE3Q8IZS6 198 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 KCNRGQ8N5I3 272 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 ZNF331Q9NQX6 463 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 PPP1R14DQ9NXH3 145 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 ZNF586Q9NXT0 402 aa8.4□□□□□ -1.06
LIMCH1-210ENST00000509454 A0A1B0GVG6 124 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 HMGB3O15347 200 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 SPRY2O43597 315 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 ZNF705DP0CH99 300 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 ZNF705BP0CI00 300 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 CDC34P49427 236 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 SMCPP49901 116 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 SERF2P84101 59 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 PSG9Q00887 426 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 HIST1H1AQ02539 215 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 AKR1C8PQ5T2L2 129 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 RNF141Q8WVD5 230 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 RPUSD4Q96CM3 377 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 FAM167A-AS1Q96KT0 104 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 ZNF471Q9BX82 626 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 TRBV19A0A075B6N1 114 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 A0A0J9YX75 114 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 ZNF705FA8MVS1 300 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 BCL2L11O43521 198 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 DUSP14O95147 198 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 NBEAP1P0C6P0 100 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 TMEM41BQ5BJD5 291 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 Q6ZWC4 215 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 TMUB2Q71RG4 321 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 IQCF2Q8IXL9 164 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 AAMDCQ9H7C9 122 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 CYTL1Q9NRR1 136 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 CLEC5AQ9NY25 188 aa8.39□□□□□ -1.07
LIMCH1-210ENST00000509454 C4BPBP20851 252 aa8.38□□□□□ -1.07
LIMCH1-210ENST00000509454 OR10J6PQ8NGY7 276 aa8.38□□□□□ -1.07
LIMCH1-210ENST00000509454 FXYD5Q96DB9 178 aa8.38□□□□□ -1.07
LIMCH1-210ENST00000509454 SAT2Q96F10 170 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-210ENST00000509454 OVOL2Q9BRP0 275 aa8.38□□□□□ -1.07
LIMCH1-210ENST00000509454 ACTR3CQ9C0K3 210 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-210ENST00000509454 XCL2Q9UBD3 114 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms