RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 PPP1R2P3Q6NXS1 205 aa0.6□□□□□ -2.31
LSM6-205ENST00000507449 KRTAP19-3Q7Z4W3 81 aa0.6□□□□□ -2.31
LSM6-205ENST00000507449 ARPINQ7Z6K5 226 aa0.6□□□□□ -2.31
LSM6-205ENST00000507449 SBSPONQ8IVN8 264 aa0.6□□□□□ -2.31
LSM6-205ENST00000507449 NUP35Q8NFH5 326 aa0.6□□□□□ -2.31
LSM6-205ENST00000507449 MALSU1Q96EH3 234 aa0.6□□□□□ -2.31
LSM6-205ENST00000507449 CD109Q6YHK3 1445 aa0.6□□□□□ -2.31
LSM6-205ENST00000507449 PEAK1Q9H792 1746 aa0.6□□□□□ -2.31
LSM6-205ENST00000507449 PLXNA4Q9HCM2 1894 aa0.6□□□□□ -2.31
LSM6-205ENST00000507449 FRMPD1Q5SYB0 1578 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 TRAV5A0A0B4J249 113 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 OR2T8A6NH00 312 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 H3BRM9 83 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 RER1O15258 196 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 APOA2P02652 100 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 G0S2P27469 103 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 CRYBA4P53673 196 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 EIF3IQ13347 325 aaKnown RBP0.59□□□□□ -2.31
LSM6-205ENST00000507449 FKBP1CQ5VVH2 108 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 HAGHLQ6PII5 290 aaPredicted RBP0.59□□□□□ -2.31
LSM6-205ENST00000507449 PHF5AQ7RTV0 110 aaKnown RBP0.59□□□□□ -2.31
LSM6-205ENST00000507449 TEN1Q86WV5 123 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 OR5AS1Q8N127 324 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 PLPP5Q8NEB5 264 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 PLEKHB2Q96CS7 222 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 TMEM138Q9NPI0 162 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 OR52A1Q9UKL2 312 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 TNFSF18Q9UNG2 199 aa0.59□□□□□ -2.31
LSM6-205ENST00000507449 CASP8AP2Q9UKL3 1982 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 TRPM1Q7Z4N2 1603 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 PHRF1Q9P1Y6 1649 aaKnown RBP0.58□□□□□ -2.32
LSM6-205ENST00000507449 hDV103S1A0JD37 113 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 C5orf67F2Z3F1 127 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 HIST1H2BKO60814 126 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 HIST1H2BJP06899 126 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 PRB4P10163 310 aaPredicted RBP0.58□□□□□ -2.32
LSM6-205ENST00000507449 GNG10P50151 68 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 HBBP68871 147 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 RTL8AQ9BWD3 113 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 OTORQ9NRC9 128 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 GID8Q9NWU2 228 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 MGAMO43451 1857 aa0.58□□□□□ -2.32
LSM6-205ENST00000507449 MYO5AQ9Y4I1 1855 aaKnown RBP0.58□□□□□ -2.32
LSM6-205ENST00000507449 CNTRLQ7Z7A1 2325 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 IGLV3-32A0A0A0MS00 114 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 C9orf170A2RU37 121 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 IDO1P14902 403 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 IFT20Q8IY31 132 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 LRRC18Q8N456 261 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 NEK7Q8TDX7 302 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 BOLA2Q9H3K6 86 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 TAF9BQ9HBM6 251 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 ALPK3Q96L96 1907 aa0.57□□□□□ -2.32
LSM6-205ENST00000507449 COL24A1Q17RW2 1714 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 EML5Q05BV3 1969 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 NISCHQ9Y2I1 1504 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 IFNA4P05014 189 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 RTL8BQ17RB0 113 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 GLIPR1L1Q6UWM5 242 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 STX19Q8N4C7 294 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 OR10AG1Q8NH19 301 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 ZNF431Q8TF32 576 aaPredicted RBP0.56□□□□□ -2.32
LSM6-205ENST00000507449 OR2H1Q9GZK4 316 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 MAP1LC3BQ9GZQ8 125 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 WFDC10AQ9H1F0 79 aa0.56□□□□□ -2.32
LSM6-205ENST00000507449 HEATR1Q9H583 2144 aaKnown RBP0.55□□□□□ -2.32
LSM6-205ENST00000507449 UNC13CQ8NB66 2214 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 JMJD7-PLA2G4BH0Y9G9 81 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 PPYP01298 95 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 TCTAP57738 103 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 C3orf33Q6P1S2 294 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 FOXI2Q6ZQN5 318 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 PRR15Q8IV56 129 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 FAM216BQ8N7L0 139 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 PSMF1Q92530 271 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 BIN3Q9NQY0 253 aa0.55□□□□□ -2.32
LSM6-205ENST00000507449 NCAPD3P42695 1498 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 CAMSAP2Q08AD1 1489 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 A0A1W2PPM0 123 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 E5RI56 91 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 H7BYZ3 331 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 GPR31O00270 319 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 CST7O76096 145 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 SERPINB1P30740 379 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 RPL35P42766 123 aaKnown RBP0.54□□□□□ -2.32
LSM6-205ENST00000507449 MIR22HGQ0VDD5 57 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 FAM24BQ8N5W8 94 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 LRTM1Q9HBL6 345 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 UBR2Q8IWV8 1755 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 NUP210LQ5VU65 1888 aa0.54□□□□□ -2.32
LSM6-205ENST00000507449 N4BP2Q86UW6 1770 aaPredicted RBP0.53□□□□□ -2.32
LSM6-205ENST00000507449 IGLV3-1P01715 115 aa0.53□□□□□ -2.32
LSM6-205ENST00000507449 CD14P08571 375 aa0.53□□□□□ -2.32
LSM6-205ENST00000507449 VBP1P61758 197 aa0.53□□□□□ -2.32
LSM6-205ENST00000507449 LINC00575Q6W349 94 aa0.53□□□□□ -2.32
LSM6-205ENST00000507449 LINC00269Q8N2A0 174 aa0.53□□□□□ -2.32
LSM6-205ENST00000507449 BORCS8Q96FH0 119 aa0.53□□□□□ -2.32
LSM6-205ENST00000507449 IL20Q9NYY1 176 aa0.53□□□□□ -2.32
LSM6-205ENST00000507449 MED11Q9P086 117 aa0.53□□□□□ -2.32
LSM6-205ENST00000507449 RTL9Q8NET4 1388 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms