RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CCDC190Q86UF4 302 aa14.76□□□□□ -0.05
SQSTM1-210ENST00000506042 OR10P1Q8NGE3 313 aa14.76□□□□□ -0.05
SQSTM1-210ENST00000506042 RPUSD4Q96CM3 377 aaKnown RBP14.76□□□□□ -0.05
SQSTM1-210ENST00000506042 TRAV8-2A0A0B4J237 113 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 GOSR2O14653 212 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 RLN2P04090 185 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 M6PRP20645 277 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 DLK1P80370 383 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 PPP1R1AQ13522 171 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 OR5I1Q13606 314 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 IGFL4Q6B9Z1 124 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 TEPPQ6URK8 271 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 ZNF546Q86UE3 836 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 ARL6Q9H0F7 186 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 Q9H8V8 135 aa14.75□□□□□ -0.05
SQSTM1-210ENST00000506042 BPIFA4PQ86YQ2 179 aa14.74□□□□□ -0.05
SQSTM1-210ENST00000506042 RNF141Q8WVD5 230 aa14.74□□□□□ -0.05
SQSTM1-210ENST00000506042 NOP10Q9NPE3 64 aaKnown RBP14.74□□□□□ -0.05
SQSTM1-210ENST00000506042 LINC00588Q9Y4M8 146 aa14.74□□□□□ -0.05
SQSTM1-210ENST00000506042 A0A1W2PPQ1 181 aa14.73□□□□□ -0.05
SQSTM1-210ENST00000506042 AZU1P20160 251 aa14.73□□□□□ -0.05
SQSTM1-210ENST00000506042 SLIRPQ9GZT3 109 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-210ENST00000506042 PTTG2Q9NZH5 202 aa14.73□□□□□ -0.05
SQSTM1-210ENST00000506042 H3BNG1 76 aa14.72□□□□□ -0.05
SQSTM1-210ENST00000506042 SSSCA1O60232 199 aa14.72□□□□□ -0.05
SQSTM1-210ENST00000506042 RAB31Q13636 194 aa14.72□□□□□ -0.05
SQSTM1-210ENST00000506042 RXFP4Q8TDU9 374 aa14.72□□□□□ -0.05
SQSTM1-210ENST00000506042 SMIM8Q96KF7 97 aa14.72□□□□□ -0.05
SQSTM1-210ENST00000506042 SOSTQ9BQB4 213 aa14.72□□□□□ -0.05
SQSTM1-210ENST00000506042 ARV1Q9H2C2 271 aa14.72□□□□□ -0.05
SQSTM1-210ENST00000506042 PXMP4Q9Y6I8 212 aa14.72□□□□□ -0.05
SQSTM1-210ENST00000506042 K7EPK0 472 aa14.71□□□□□ -0.05
SQSTM1-210ENST00000506042 POLR2GP62487 172 aaKnown RBP eCLIP14.71□□□□□ -0.05
SQSTM1-210ENST00000506042 ID3Q02535 119 aa14.71□□□□□ -0.05
SQSTM1-210ENST00000506042 FCN2Q15485 313 aa14.71□□□□□ -0.05
SQSTM1-210ENST00000506042 TMEM182Q6ZP80 229 aaPredicted RBP14.71□□□□□ -0.05
SQSTM1-210ENST00000506042 RNASE8Q8TDE3 154 aaKnown RBP14.71□□□□□ -0.05
SQSTM1-210ENST00000506042 TRIM63Q969Q1 353 aa14.71□□□□□ -0.05
SQSTM1-210ENST00000506042 UHRF2Q96PU4 802 aa14.71□□□□□ -0.05
SQSTM1-210ENST00000506042 PLAC8L1A1L4L8 177 aa14.7□□□□□ -0.06
SQSTM1-210ENST00000506042 NAP1L6A6NFF2 107 aa14.7□□□□□ -0.06
SQSTM1-210ENST00000506042 EREGO14944 169 aa14.7□□□□□ -0.06
SQSTM1-210ENST00000506042 COX7A2P2O60397 106 aa14.7□□□□□ -0.06
SQSTM1-210ENST00000506042 LEPP41159 167 aa14.7□□□□□ -0.06
SQSTM1-210ENST00000506042 TAS2R30P59541 319 aa14.7□□□□□ -0.06
SQSTM1-210ENST00000506042 RRAS2P62070 204 aaPredicted RBP14.7□□□□□ -0.06
SQSTM1-210ENST00000506042 Q9H3A6 140 aa14.7□□□□□ -0.06
SQSTM1-210ENST00000506042 TRAV26-1A0A087WT03 109 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 PMS2P5A8MQ11 134 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 PRM2P04554 102 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 GUK1Q16774 197 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 SPANXN2Q5MJ10 180 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 LINC00305Q7Z4B0 112 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 SPATA12Q7Z6I5 190 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 C17orf77Q96MU5 243 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 GGACTQ9BVM4 153 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 ZNF331Q9NQX6 463 aaPredicted RBP14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 PKHD1P08F94 4074 aa14.69□□□□□ -0.06
SQSTM1-210ENST00000506042 CENPXA8MT69 81 aa14.68□□□□□ -0.06
SQSTM1-210ENST00000506042 H3BMQ9 156 aa14.68□□□□□ -0.06
SQSTM1-210ENST00000506042 TSC22D2O75157 780 aa14.68□□□□□ -0.06
SQSTM1-210ENST00000506042 SCGB1D2O95969 90 aa14.68□□□□□ -0.06
SQSTM1-210ENST00000506042 Q6ZRG5 221 aa14.68□□□□□ -0.06
SQSTM1-210ENST00000506042 UPK3BQ9BT76 320 aa14.68□□□□□ -0.06
SQSTM1-210ENST00000506042 C9orf170A2RU37 121 aa14.67□□□□□ -0.06
SQSTM1-210ENST00000506042 METTL15P1P0C7V9 234 aa14.67□□□□□ -0.06
SQSTM1-210ENST00000506042 TRIQKQ629K1 86 aa14.67□□□□□ -0.06
SQSTM1-210ENST00000506042 Q8N1X5 172 aa14.67□□□□□ -0.06
SQSTM1-210ENST00000506042 PYGO2Q9BRQ0 406 aa14.67□□□□□ -0.06
SQSTM1-210ENST00000506042 CNPY1Q3B7I2 92 aa14.66□□□□□ -0.06
SQSTM1-210ENST00000506042 C4orf46Q504U0 113 aa14.66□□□□□ -0.06
SQSTM1-210ENST00000506042 C10orf113Q5VZT2 155 aa14.66□□□□□ -0.06
SQSTM1-210ENST00000506042 ZBTB8BQ8NAP8 495 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-210ENST00000506042 ZNF680Q8NEM1 530 aa14.66□□□□□ -0.06
SQSTM1-210ENST00000506042 ODF3Q96PU9 254 aa14.66□□□□□ -0.06
SQSTM1-210ENST00000506042 MRPS16Q9Y3D3 137 aaKnown RBP14.66□□□□□ -0.06
SQSTM1-210ENST00000506042 FAT2Q9NYQ8 4349 aa14.66□□□□□ -0.06
SQSTM1-210ENST00000506042 GAGE12BA1L429 117 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 CCDC160A6NGH7 325 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 L7N2F9 121 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 ZNF701M0R085 212 aaPredicted RBP14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 GAGE7O76087 117 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 GAGE12FP0CL80 117 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 GAGE12GP0CL81 117 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 GAGE12IP0CL82 117 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 VAMP2P63027 116 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 SLC38A11Q08AI6 406 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 ZNF846Q147U1 533 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 IAH1Q2TAA2 248 aaPredicted RBP14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 TMEM14EPQ6UXP3 125 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 C12orf45Q8N5I9 185 aaPredicted RBP14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 OR1L4Q8NGR5 311 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 PFDN5Q99471 154 aa14.65□□□□□ -0.06
SQSTM1-210ENST00000506042 TRGV2A0A075B6R0 118 aa14.64□□□□□ -0.07
SQSTM1-210ENST00000506042 AGPAT2O15120 278 aa14.64□□□□□ -0.07
SQSTM1-210ENST00000506042 SCRT2Q9NQ03 307 aa14.64□□□□□ -0.07
SQSTM1-210ENST00000506042 A0A0J9YY99 117 aa14.63□□□□□ -0.07
SQSTM1-210ENST00000506042 GFI1BQ5VTD9 330 aa14.63□□□□□ -0.07
SQSTM1-210ENST00000506042 V9GYH0 126 aa14.63□□□□□ -0.07
SQSTM1-210ENST00000506042 DNAH2Q9P225 4427 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms