RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 IGLC1P0CG04 106 aa13.05□□□□□ -0.32
CCDC88B-210ENST00000494566 GP9P14770 177 aa13.05□□□□□ -0.32
CCDC88B-210ENST00000494566 KLRB1Q12918 225 aa13.05□□□□□ -0.32
CCDC88B-210ENST00000494566 OR4C5Q8NGB2 326 aa13.05□□□□□ -0.32
CCDC88B-210ENST00000494566 MYCNOSP40205 109 aa13.05□□□□□ -0.32
CCDC88B-210ENST00000494566 RAB1BQ9H0U4 201 aa13.05□□□□□ -0.32
CCDC88B-210ENST00000494566 LINC00614P0C842 121 aa13.04□□□□□ -0.32
CCDC88B-210ENST00000494566 SFTPCP11686 197 aa13.04□□□□□ -0.32
CCDC88B-210ENST00000494566 FBXL19-AS1Q494R0 122 aa13.04□□□□□ -0.32
CCDC88B-210ENST00000494566 FAM120AOSQ5T036 256 aa13.04□□□□□ -0.32
CCDC88B-210ENST00000494566 COX11Q9Y6N1 276 aa13.04□□□□□ -0.32
CCDC88B-210ENST00000494566 I3L2K1 104 aa13.04□□□□□ -0.32
CCDC88B-210ENST00000494566 DYNAPQ8N1N2 210 aa13.04□□□□□ -0.32
CCDC88B-210ENST00000494566 OR8A1Q8NGG7 326 aa13.04□□□□□ -0.32
CCDC88B-210ENST00000494566 MRPL27Q9P0M9 148 aaKnown RBP13.04□□□□□ -0.32
CCDC88B-210ENST00000494566 CRYBG3Q68DQ2 2970 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 A8MWL6 223 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 SYS1-DBNDD2H3BUS1 97 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 NCR2O95944 276 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 LOXL1Q08397 574 aaPredicted RBP13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 ZNF738Q8NE65 137 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 RASL11BQ9BPW5 248 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 HIGD1AQ9Y241 93 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 CELSR2Q9HCU4 2923 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 IGKV1-17P01599 117 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 C8orf46Q8TAG6 207 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 DPM3Q9P2X0 92 aa13.03□□□□□ -0.32
CCDC88B-210ENST00000494566 LOC105371242A0A075B767 164 aa13.02□□□□□ -0.32
CCDC88B-210ENST00000494566 PVRIGQ6DKI7 326 aa13.02□□□□□ -0.32
CCDC88B-210ENST00000494566 SLC25A39Q9BZJ4 359 aaPredicted RBP13.02□□□□□ -0.32
CCDC88B-210ENST00000494566 A0A1B0GXF2 115 aa13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 K7EIM0 57 aa13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 COX19Q49B96 90 aa13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 LY6G5BQ8NDX9 201 aa13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 C8orf49Q96NF6 230 aa13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 NCBP2LA6PVI3 153 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 SMKR1H3BMG3 65 aa13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 APOHP02749 345 aaPredicted RBP13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 TIMD4Q96H15 378 aa13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 CBY1Q9Y3M2 126 aa13.02□□□□□ -0.33
CCDC88B-210ENST00000494566 NBR2O15453 112 aa13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 NHLH1Q02575 133 aa13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 FAM231DQ6ZW35 169 aa13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 CFHR4Q92496 578 aa13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 SPG11Q96JI7 2443 aa13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 CSMD2Q7Z408 3487 aa13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 ZFP36P26651 326 aaKnown RBP13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 FCGR2BP31994 310 aaPredicted RBP13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 C5orf17Q8NAS9 161 aa13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 UTP20O75691 2785 aaKnown RBP13.01□□□□□ -0.33
CCDC88B-210ENST00000494566 NDPQ00604 133 aa13□□□□□ -0.33
CCDC88B-210ENST00000494566 RBPMS2Q6ZRY4 209 aaKnown RBP13□□□□□ -0.33
CCDC88B-210ENST00000494566 MLST8Q9BVC4 326 aa13□□□□□ -0.33
CCDC88B-210ENST00000494566 UBE2V1Q13404 147 aa13□□□□□ -0.33
CCDC88B-210ENST00000494566 AMMECR1LQ6DCA0 310 aa13□□□□□ -0.33
CCDC88B-210ENST00000494566 C11orf71Q6IPW1 123 aa13□□□□□ -0.33
CCDC88B-210ENST00000494566 Q86TA4 180 aa13□□□□□ -0.33
CCDC88B-210ENST00000494566 TMEM213A2RRL7 107 aa12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 TM4SF20Q53R12 229 aa12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 STXBP6Q8NFX7 210 aa12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 WIPF2Q8TF74 440 aaPredicted RBP12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 IL4P05112 153 aa12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 VMO1Q7Z5L0 202 aa12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 PRSS3P2Q8NHM4 247 aa12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 CFAP46Q8IYW2 2715 aa12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 HSBP1L1C9JCN9 74 aa12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 KLF5Q13887 457 aaPredicted RBP12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 Q8TAT8 98 aa12.99□□□□□ -0.33
CCDC88B-210ENST00000494566 IGHV3OR16-13A0A075B7E8 117 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 IGHV3-74A0A0B4J1X5 117 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 OR2J3O76001 311 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 TOMM40O96008 361 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 LTAP01374 205 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 PRSS57Q6UWY2 283 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 ZNF785A8K8V0 405 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 IFI27P40305 119 aaPredicted RBP12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 TMEM75Q8N9X5 138 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 OR11H6Q8NGC7 330 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 MAP1LC3CQ9BXW4 147 aa12.98□□□□□ -0.33
CCDC88B-210ENST00000494566 TMEM11P17152 192 aa12.97□□□□□ -0.33
CCDC88B-210ENST00000494566 SLC25A34Q6PIV7 304 aa12.97□□□□□ -0.33
CCDC88B-210ENST00000494566 UBTD1Q9HAC8 227 aa12.97□□□□□ -0.33
CCDC88B-210ENST00000494566 MRPS16Q9Y3D3 137 aaKnown RBP12.97□□□□□ -0.33
CCDC88B-210ENST00000494566 FLNCQ14315 2725 aa12.97□□□□□ -0.33
CCDC88B-210ENST00000494566 C19orf71A6NCJ1 209 aa12.97□□□□□ -0.33
CCDC88B-210ENST00000494566 HLA-DMBP28068 263 aa12.97□□□□□ -0.33
CCDC88B-210ENST00000494566 PPIFP30405 207 aaKnown RBP12.97□□□□□ -0.33
CCDC88B-210ENST00000494566 PKD1L2Q7Z442 2459 aa12.97□□□□□ -0.33
CCDC88B-210ENST00000494566 ORAOV1Q8WV07 137 aa12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 C18orf15Q96N68 181 aa12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 KLF12Q9Y4X4 402 aa12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 IGKV2-40A0A087WW87 121 aaPredicted RBP12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 IGKV2D-40P01614 121 aaPredicted RBP12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 UCNP55089 124 aa12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 PLP1P60201 277 aa12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 C5orf64Q2M2E5 130 aa12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 AMN1Q8IY45 258 aa12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 RAB37Q96AX2 223 aa12.96□□□□□ -0.33
CCDC88B-210ENST00000494566 FMC1Q96HJ9 113 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms