RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 ZNF503Q96F45 646 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 PHYHIPLQ96FC7 376 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 C16orf92Q96LL3 132 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 ZNF586Q9NXT0 402 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 TMEM14CQ9P0S9 112 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 UBQLN2Q9UHD9 624 aa12.87□□□□□ -0.35
LIME1-208ENST00000493265 NBEAL2Q6ZNJ1 2754 aa12.86□□□□□ -0.35
LIME1-208ENST00000493265 MAP1LC3B2A6NCE7 125 aa12.86□□□□□ -0.35
LIME1-208ENST00000493265 STAG3L2P0CL84 134 aa12.86□□□□□ -0.35
LIME1-208ENST00000493265 STAG3L3P0CL85 134 aa12.86□□□□□ -0.35
LIME1-208ENST00000493265 IGLC2P0DOY2 106 aa12.86□□□□□ -0.35
LIME1-208ENST00000493265 SULT1A2P50226 295 aa12.86□□□□□ -0.35
LIME1-208ENST00000493265 CD81P60033 236 aa12.86□□□□□ -0.35
LIME1-208ENST00000493265 DCANP1Q8TF63 244 aa12.86□□□□□ -0.35
LIME1-208ENST00000493265 MAP1LC3BQ9GZQ8 125 aa12.86□□□□□ -0.35
LIME1-208ENST00000493265 KMT2CQ8NEZ4 4911 aaKnown RBP12.85□□□□□ -0.35
LIME1-208ENST00000493265 K7EQG2 157 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 CXorf1O96002 111 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 CD7P09564 240 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 ZNF688P0C7X2 276 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 HIST1H1EP10412 219 aaKnown RBP12.85□□□□□ -0.35
LIME1-208ENST00000493265 RAB5CP51148 216 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 EGFEM1PQ0D2K5 195 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 DPPA3Q6W0C5 159 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 PQLC2Q6ZP29 291 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 SFT2D1Q8WV19 159 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 FXYD5Q96DB9 178 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 LINC00052Q96N35 136 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 HRH4Q9H3N8 390 aa12.85□□□□□ -0.35
LIME1-208ENST00000493265 A0A087X0K7 114 aa12.84□□□□□ -0.35
LIME1-208ENST00000493265 ZNF705EA8MWA4 302 aaPredicted RBP12.84□□□□□ -0.35
LIME1-208ENST00000493265 SLC17A3O00476 420 aa12.84□□□□□ -0.35
LIME1-208ENST00000493265 H2AFB1P0C5Y9 115 aa12.84□□□□□ -0.35
LIME1-208ENST00000493265 NBEAP1P0C6P0 100 aa12.84□□□□□ -0.35
LIME1-208ENST00000493265 PRB4P10163 310 aaPredicted RBP12.84□□□□□ -0.35
LIME1-208ENST00000493265 GCHFRP30047 84 aa12.84□□□□□ -0.35
LIME1-208ENST00000493265 MEOX2P50222 304 aa12.84□□□□□ -0.35
LIME1-208ENST00000493265 GTSCR1Q86UQ5 136 aa12.84□□□□□ -0.35
LIME1-208ENST00000493265 RNF182Q8N6D2 247 aa12.84□□□□□ -0.35
LIME1-208ENST00000493265 TMPRSS5Q9H3S3 457 aa12.84□□□□□ -0.35
LIME1-208ENST00000493265 AURKAIP1Q9NWT8 199 aaPredicted RBP12.84□□□□□ -0.35
LIME1-208ENST00000493265 ZMAT5Q9UDW3 170 aaKnown RBP12.84□□□□□ -0.35
LIME1-208ENST00000493265 TRBV19A0A075B6N1 114 aa12.83□□□□□ -0.36
LIME1-208ENST00000493265 HLA-DMBP28068 263 aa12.83□□□□□ -0.36
LIME1-208ENST00000493265 ID1P41134 155 aa12.83□□□□□ -0.36
LIME1-208ENST00000493265 PSMG4Q5JS54 123 aa12.83□□□□□ -0.36
LIME1-208ENST00000493265 TEX261Q6UWH6 196 aa12.83□□□□□ -0.36
LIME1-208ENST00000493265 TRAV2A0A0B4J234 112 aa12.82□□□□□ -0.36
LIME1-208ENST00000493265 SOCS3O14543 225 aa12.82□□□□□ -0.36
LIME1-208ENST00000493265 DEFB131AP59861 70 aa12.82□□□□□ -0.36
LIME1-208ENST00000493265 SNRPD3P62318 126 aaKnown RBP12.82□□□□□ -0.36
LIME1-208ENST00000493265 GUK1Q16774 197 aa12.82□□□□□ -0.36
LIME1-208ENST00000493265 WFDC10AQ9H1F0 79 aa12.82□□□□□ -0.36
LIME1-208ENST00000493265 TRAV8-2A0A0B4J237 113 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 ISLRO14498 428 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 NDUFB4O95168 129 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 IFNA7P01567 189 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 PSMB3P49720 205 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 RANP62826 216 aaKnown RBP12.81□□□□□ -0.36
LIME1-208ENST00000493265 ODF3L2Q3SX64 289 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 APRG1Q8IVJ8 170 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 EXOC3-AS1Q8N2X6 119 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 ZNF680Q8NEM1 530 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 PCNPQ8WW12 178 aaKnown RBP12.81□□□□□ -0.36
LIME1-208ENST00000493265 MBD3L1Q8WWY6 194 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 SAT2Q96F10 170 aaPredicted RBP12.81□□□□□ -0.36
LIME1-208ENST00000493265 C20orf173Q96LM9 149 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 MAP6D1Q9H9H5 199 aa12.81□□□□□ -0.36
LIME1-208ENST00000493265 ZNF331Q9NQX6 463 aaPredicted RBP12.81□□□□□ -0.36
LIME1-208ENST00000493265 OR11H12B2RN74 326 aa12.8□□□□□ -0.36
LIME1-208ENST00000493265 DEFB1P60022 68 aa12.8□□□□□ -0.36
LIME1-208ENST00000493265 UBE2G2P60604 165 aa12.8□□□□□ -0.36
LIME1-208ENST00000493265 ZNF124Q15973 351 aa12.8□□□□□ -0.36
LIME1-208ENST00000493265 SAMD13Q5VXD3 122 aa12.8□□□□□ -0.36
LIME1-208ENST00000493265 SLC50A1Q9BRV3 221 aa12.8□□□□□ -0.36
LIME1-208ENST00000493265 TMEM167BQ9NRX6 74 aa12.8□□□□□ -0.36
LIME1-208ENST00000493265 PSG9Q00887 426 aa12.79□□□□□ -0.36
LIME1-208ENST00000493265 ICAM4Q14773 271 aa12.79□□□□□ -0.36
LIME1-208ENST00000493265 DEFB125Q8N687 156 aa12.79□□□□□ -0.36
LIME1-208ENST00000493265 ZNF738Q8NE65 137 aa12.79□□□□□ -0.36
LIME1-208ENST00000493265 RYR3Q15413 4870 aa12.79□□□□□ -0.36
LIME1-208ENST00000493265 ZNF705FA8MVS1 300 aaPredicted RBP12.78□□□□□ -0.36
LIME1-208ENST00000493265 BLOC1S1P78537 153 aa12.78□□□□□ -0.36
LIME1-208ENST00000493265 CCL20P78556 96 aa12.78□□□□□ -0.36
LIME1-208ENST00000493265 PDE6HQ13956 83 aa12.78□□□□□ -0.36
LIME1-208ENST00000493265 PSG3Q16557 428 aa12.78□□□□□ -0.36
LIME1-208ENST00000493265 Q9H3A6 140 aa12.78□□□□□ -0.36
LIME1-208ENST00000493265 AAMDCQ9H7C9 122 aa12.78□□□□□ -0.36
LIME1-208ENST00000493265 KNCNA6PVL3 124 aa12.77□□□□□ -0.37
LIME1-208ENST00000493265 TEX46H3BTG2 121 aa12.77□□□□□ -0.37
LIME1-208ENST00000493265 ZNF253O75346 499 aa12.77□□□□□ -0.37
LIME1-208ENST00000493265 HBE1P02100 147 aa12.77□□□□□ -0.37
LIME1-208ENST00000493265 CMC4P56277 68 aaPredicted RBP12.77□□□□□ -0.37
LIME1-208ENST00000493265 Q8N1Y9 231 aa12.77□□□□□ -0.37
LIME1-208ENST00000493265 C19orf73Q9NVV2 129 aa12.77□□□□□ -0.37
LIME1-208ENST00000493265 RPH3ALQ9UNE2 315 aa12.77□□□□□ -0.37
LIME1-208ENST00000493265 PGPA6NDG6 321 aa12.76□□□□□ -0.37
LIME1-208ENST00000493265 F6UB75 175 aa12.76□□□□□ -0.37
LIME1-208ENST00000493265 M0R3E3 92 aa12.76□□□□□ -0.37
LIME1-208ENST00000493265 RPUSD4Q96CM3 377 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms