RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PATE2Q6UY27 113 aa9.64□□□□□ -0.87
COL6A3-211ENST00000491233 Q6ZR54 194 aa9.64□□□□□ -0.87
COL6A3-211ENST00000491233 S100A7AQ86SG5 101 aa9.64□□□□□ -0.87
COL6A3-211ENST00000491233 LRRC20Q8TCA0 184 aa9.64□□□□□ -0.87
COL6A3-211ENST00000491233 GSKIPQ9P0R6 139 aa9.64□□□□□ -0.87
COL6A3-211ENST00000491233 LYRM9A8MSI8 78 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 IL7P13232 177 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 TSPOP30536 169 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 TAS2R30P59541 319 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 B2MP61769 119 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 ARL16Q0P5N6 197 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 PSG3Q16557 428 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 RNF212Q495C1 297 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 ZNF546Q86UE3 836 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 MITD1Q8WV92 249 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 C20orf85Q9H1P6 137 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 PPP1R14DQ9NXH3 145 aa9.63□□□□□ -0.87
COL6A3-211ENST00000491233 DYNC1H1Q14204 4646 aaKnown RBP9.63□□□□□ -0.87
COL6A3-211ENST00000491233 PLAC8L1A1L4L8 177 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 CCSO14618 274 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 GOSR2O14653 212 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 MBPP02686 304 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-211ENST00000491233 DEFB130BP0DP73 79 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 DEFB130AP0DP74 79 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 AZU1P20160 251 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 PXDC1Q5TGL8 231 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 LCN15Q6UWW0 184 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 C15orf53Q8NAA6 179 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 RPUSD4Q96CM3 377 aaKnown RBP9.62□□□□□ -0.87
COL6A3-211ENST00000491233 LINC01587Q99440 93 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 RNF24Q9Y225 148 aa9.62□□□□□ -0.87
COL6A3-211ENST00000491233 C7orf66A4D0T2 115 aa9.61□□□□□ -0.87
COL6A3-211ENST00000491233 AGPAT2O15120 278 aa9.61□□□□□ -0.87
COL6A3-211ENST00000491233 SNRPCP09234 159 aaKnown RBP9.61□□□□□ -0.87
COL6A3-211ENST00000491233 CXCL2P19875 107 aa9.61□□□□□ -0.87
COL6A3-211ENST00000491233 LINC00305Q7Z4B0 112 aa9.61□□□□□ -0.87
COL6A3-211ENST00000491233 TMEM256Q8N2U0 113 aa9.61□□□□□ -0.87
COL6A3-211ENST00000491233 MGST2Q99735 147 aa9.61□□□□□ -0.87
COL6A3-211ENST00000491233 SLC50A1Q9BRV3 221 aa9.61□□□□□ -0.87
COL6A3-211ENST00000491233 ZNF331Q9NQX6 463 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-211ENST00000491233 DNAH11Q96DT5 4516 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 F5H768 121 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 H3BTX0 84 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 L7N2F9 121 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 COX7A2P2O60397 106 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 HTN1P15515 57 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 CDKN1BP46527 198 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 TAS2R60P59551 318 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 VAMP2P63027 116 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 ZNF846Q147U1 533 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 FCN2Q15485 313 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 CNPY1Q3B7I2 92 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 C16orf74Q96GX8 76 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 GGACTQ9BVM4 153 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 LSM5Q9Y4Y9 91 aaKnown RBP9.6□□□□□ -0.87
COL6A3-211ENST00000491233 PKHD1P08F94 4074 aa9.6□□□□□ -0.87
COL6A3-211ENST00000491233 SLC17A3O00476 420 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 PLA2G10O15496 165 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 ATP5G1P05496 136 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 ATP5G3P48201 142 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 OPCMLQ14982 345 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 SOHLH1Q5JUK2 328 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 MORN5Q5VZ52 161 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 BPIFA4PQ86YQ2 179 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 TMEM37Q8WXS4 190 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 ATG101Q9BSB4 218 aa9.59□□□□□ -0.87
COL6A3-211ENST00000491233 PARD6GQ9BYG4 376 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-211ENST00000491233 TRAV6A0A075B6T7 132 aa9.58□□□□□ -0.88
COL6A3-211ENST00000491233 FAM25EA8MYX2 175 aa9.58□□□□□ -0.88
COL6A3-211ENST00000491233 LYRM1O43325 122 aa9.58□□□□□ -0.88
COL6A3-211ENST00000491233 NUDT3O95989 172 aa9.58□□□□□ -0.88
COL6A3-211ENST00000491233 MED14OSP0DP75 135 aa9.58□□□□□ -0.88
COL6A3-211ENST00000491233 BCAP31P51572 246 aa9.58□□□□□ -0.88
COL6A3-211ENST00000491233 FAM3BP58499 235 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-211ENST00000491233 C10orf113Q5VZT2 155 aa9.58□□□□□ -0.88
COL6A3-211ENST00000491233 PKD1P98161 4303 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 PRAC2D3DTV9 90 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 CST7O76096 145 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 IGLC2P0DOY2 106 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 CAMLGP49069 296 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 CAV2P51636 162 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 KIR3DS1Q14943 382 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 C1orf134Q5TEV5 83 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 MIC13Q5XKP0 118 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 OR10J6PQ8NGY7 276 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 RNASE8Q8TDE3 154 aaKnown RBP9.57□□□□□ -0.88
COL6A3-211ENST00000491233 TMEM263Q8WUH6 116 aaKnown RBP9.57□□□□□ -0.88
COL6A3-211ENST00000491233 SEC22CQ9BRL7 303 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 C11orf1Q9H5F2 150 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 NUDT15Q9NV35 164 aa9.57□□□□□ -0.88
COL6A3-211ENST00000491233 TIMM8BQ9Y5J9 83 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-211ENST00000491233 UBE2L5PA0A1B0GUS4 154 aa9.56□□□□□ -0.88
COL6A3-211ENST00000491233 C5orf51A6NDU8 294 aa9.56□□□□□ -0.88
COL6A3-211ENST00000491233 FAM24AA6NFZ4 105 aa9.56□□□□□ -0.88
COL6A3-211ENST00000491233 CBY3A6NI87 242 aa9.56□□□□□ -0.88
COL6A3-211ENST00000491233 H3BQ15 152 aa9.56□□□□□ -0.88
COL6A3-211ENST00000491233 H7BYZ3 331 aa9.56□□□□□ -0.88
COL6A3-211ENST00000491233 TCRBP04435 133 aa9.56□□□□□ -0.88
COL6A3-211ENST00000491233 GFI1BQ5VTD9 330 aa9.56□□□□□ -0.88
COL6A3-211ENST00000491233 ZNF493Q6ZR52 646 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms