RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 HRH4Q9H3N8 390 aa12.64□□□□□ -0.39
MDC1-206ENST00000489540 TRAV5A0A0B4J249 113 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 F6UB75 175 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 DUSP14O95147 198 aaKnown RBP12.63□□□□□ -0.39
MDC1-206ENST00000489540 IGKV3-20P01619 116 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 PSG9Q00887 426 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 PSG3Q16557 428 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 GUK1Q16774 197 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 IGFL4Q6B9Z1 124 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 ZFAND6Q6FIF0 208 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 RNF182Q8N6D2 247 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 ZNF738Q8NE65 137 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 SLC50A1Q9BRV3 221 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 PARD6GQ9BYG4 376 aaPredicted RBP12.63□□□□□ -0.39
MDC1-206ENST00000489540 SMIM3Q9BZL3 60 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 ZNF331Q9NQX6 463 aaPredicted RBP12.63□□□□□ -0.39
MDC1-206ENST00000489540 CLEC5AQ9NY25 188 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 XCL2Q9UBD3 114 aa12.63□□□□□ -0.39
MDC1-206ENST00000489540 IGLC2P0DOY2 106 aa12.62□□□□□ -0.39
MDC1-206ENST00000489540 TMEM14CQ9P0S9 112 aa12.62□□□□□ -0.39
MDC1-206ENST00000489540 ZNF705EA8MWA4 302 aaPredicted RBP12.62□□□□□ -0.39
MDC1-206ENST00000489540 GCSAMLQ5JQS6 135 aa12.62□□□□□ -0.39
MDC1-206ENST00000489540 C11orf68Q9H3H3 251 aaKnown RBP12.62□□□□□ -0.39
MDC1-206ENST00000489540 AGRNO00468 2067 aa12.61□□□□□ -0.39
MDC1-206ENST00000489540 DNAH7Q8WXX0 4024 aa12.61□□□□□ -0.39
MDC1-206ENST00000489540 A8MTW9 85 aa12.61□□□□□ -0.39
MDC1-206ENST00000489540 H3BQ15 152 aa12.61□□□□□ -0.39
MDC1-206ENST00000489540 MIFP14174 115 aa12.61□□□□□ -0.39
MDC1-206ENST00000489540 SAT2Q96F10 170 aaPredicted RBP12.61□□□□□ -0.39
MDC1-206ENST00000489540 AQP10Q96PS8 301 aa12.61□□□□□ -0.39
MDC1-206ENST00000489540 ZNF253O75346 499 aa12.6□□□□□ -0.39
MDC1-206ENST00000489540 SNRPCP09234 159 aaKnown RBP12.6□□□□□ -0.39
MDC1-206ENST00000489540 CNN1P51911 297 aaKnown RBP12.6□□□□□ -0.39
MDC1-206ENST00000489540 Q5BKY6 102 aa12.6□□□□□ -0.39
MDC1-206ENST00000489540 MRPL32Q9BYC8 188 aaKnown RBP12.6□□□□□ -0.39
MDC1-206ENST00000489540 WFDC1Q9HC57 220 aa12.6□□□□□ -0.39
MDC1-206ENST00000489540 HIST1H1EP10412 219 aaKnown RBP12.59□□□□□ -0.39
MDC1-206ENST00000489540 HLA-DMBP28068 263 aa12.59□□□□□ -0.39
MDC1-206ENST00000489540 FXYD7P58549 80 aa12.59□□□□□ -0.39
MDC1-206ENST00000489540 INO80EQ8NBZ0 244 aaPredicted RBP12.59□□□□□ -0.39
MDC1-206ENST00000489540 OR8A1Q8NGG7 326 aa12.59□□□□□ -0.39
MDC1-206ENST00000489540 RPUSD4Q96CM3 377 aaKnown RBP12.59□□□□□ -0.39
MDC1-206ENST00000489540 MFFQ9GZY8 342 aa12.59□□□□□ -0.39
MDC1-206ENST00000489540 SLC35B3Q9H1N7 401 aa12.59□□□□□ -0.39
MDC1-206ENST00000489540 ZNF586Q9NXT0 402 aa12.59□□□□□ -0.39
MDC1-206ENST00000489540 H3BTX0 84 aa12.58□□□□□ -0.4
MDC1-206ENST00000489540 AMBPP02760 352 aa12.58□□□□□ -0.4
MDC1-206ENST00000489540 ZNF266Q14584 549 aa12.58□□□□□ -0.4
MDC1-206ENST00000489540 FFAR4Q5NUL3 377 aa12.58□□□□□ -0.4
MDC1-206ENST00000489540 Q8NAQ8 132 aa12.58□□□□□ -0.4
MDC1-206ENST00000489540 OR2T35Q8NGX2 323 aa12.58□□□□□ -0.4
MDC1-206ENST00000489540 SLC25A2Q9BXI2 301 aa12.58□□□□□ -0.4
MDC1-206ENST00000489540 FUT9Q9Y231 359 aa12.58□□□□□ -0.4
MDC1-206ENST00000489540 X6R8D5 127 aa12.58□□□□□ -0.4
MDC1-206ENST00000489540 TRBV19A0A075B6N1 114 aa12.57□□□□□ -0.4
MDC1-206ENST00000489540 SLC17A3O00476 420 aa12.57□□□□□ -0.4
MDC1-206ENST00000489540 ZNF705DP0CH99 300 aaPredicted RBP12.57□□□□□ -0.4
MDC1-206ENST00000489540 ZNF705BP0CI00 300 aaPredicted RBP12.57□□□□□ -0.4
MDC1-206ENST00000489540 HIST1H1AQ02539 215 aaPredicted RBP12.57□□□□□ -0.4
MDC1-206ENST00000489540 PDE6HQ13956 83 aa12.57□□□□□ -0.4
MDC1-206ENST00000489540 AMTNQ6UX39 209 aa12.57□□□□□ -0.4
MDC1-206ENST00000489540 ZNF705AQ6ZN79 300 aaPredicted RBP12.57□□□□□ -0.4
MDC1-206ENST00000489540 MIR17HGQ75NE6 70 aa12.57□□□□□ -0.4
MDC1-206ENST00000489540 FAM167A-AS1Q96KT0 104 aa12.57□□□□□ -0.4
MDC1-206ENST00000489540 NEU1Q99519 415 aa12.57□□□□□ -0.4
MDC1-206ENST00000489540 TIMM9Q9Y5J7 89 aa12.57□□□□□ -0.4
MDC1-206ENST00000489540 IGHV4-28A0A0C4DH34 117 aa12.56□□□□□ -0.4
MDC1-206ENST00000489540 SMIM9A6NGZ8 99 aa12.56□□□□□ -0.4
MDC1-206ENST00000489540 RHOBP62745 196 aa12.56□□□□□ -0.4
MDC1-206ENST00000489540 C11orf45Q8TAV5 145 aa12.56□□□□□ -0.4
MDC1-206ENST00000489540 OR51M1Q9H341 326 aa12.56□□□□□ -0.4
MDC1-206ENST00000489540 PPP1R14DQ9NXH3 145 aa12.56□□□□□ -0.4
MDC1-206ENST00000489540 GOLT1BQ9Y3E0 138 aa12.56□□□□□ -0.4
MDC1-206ENST00000489540 FXYD6-FXYD2A0A087WZ82 144 aa12.55□□□□□ -0.4
MDC1-206ENST00000489540 CXorf65A6NEN9 183 aa12.55□□□□□ -0.4
MDC1-206ENST00000489540 ZNF705FA8MVS1 300 aaPredicted RBP12.55□□□□□ -0.4
MDC1-206ENST00000489540 DEFB4AO15263 64 aa12.55□□□□□ -0.4
MDC1-206ENST00000489540 PYYP10082 97 aa12.55□□□□□ -0.4
MDC1-206ENST00000489540 ACOT6Q3I5F7 207 aaPredicted RBP12.55□□□□□ -0.4
MDC1-206ENST00000489540 OR10J6PQ8NGY7 276 aa12.55□□□□□ -0.4
MDC1-206ENST00000489540 PAXXQ9BUH6 204 aa12.55□□□□□ -0.4
MDC1-206ENST00000489540 NBEAP1P0C6P0 100 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 RBMY1A1P0DJD3 496 aaKnown RBP12.54□□□□□ -0.4
MDC1-206ENST00000489540 RBMY1CP0DJD4 496 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 TAS2R45P59539 299 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 RBMY1FQ15415 496 aaKnown RBP12.54□□□□□ -0.4
MDC1-206ENST00000489540 MRPL53Q96EL3 112 aaKnown RBP12.54□□□□□ -0.4
MDC1-206ENST00000489540 IGF2BP2-AS1Q96M15 143 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 TNFSF18Q9UNG2 199 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 PRELID1Q9Y255 219 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 NDUFB4O95168 129 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 M6PRP20645 277 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 PMS2P11Q13670 270 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 BLNKQ8WV28 456 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 RNF141Q8WVD5 230 aa12.54□□□□□ -0.4
MDC1-206ENST00000489540 IGHV3OR16-12A0A075B7B8 117 aa12.53□□□□□ -0.4
MDC1-206ENST00000489540 NUPR2A6NF83 97 aa12.53□□□□□ -0.4
MDC1-206ENST00000489540 BOLA2-SMG1P6H3BVE0 249 aa12.53□□□□□ -0.4
MDC1-206ENST00000489540 SPINK13Q1W4C9 94 aa12.53□□□□□ -0.4
MDC1-206ENST00000489540 C1orf158Q8N1D5 194 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms