RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 HRH4Q9H3N8 390 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 ZNF586Q9NXT0 402 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 TRAV2A0A0B4J234 112 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 OR4C46A6NHA9 309 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 K7EQG2 157 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 NBEAP1P0C6P0 100 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 GCHFRP30047 84 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 MEOX2P50222 304 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 UBE2L3P68036 154 aaKnown RBP9.17□□□□□ -0.94
SDC1-206ENST00000482879 GUK1Q16774 197 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 IQCF2Q8IXL9 164 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 DCANP1Q8TF63 244 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 BLNKQ8WV28 456 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 FXYD5Q96DB9 178 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 C16orf92Q96LL3 132 aa9.17□□□□□ -0.94
SDC1-206ENST00000482879 ZMAT5Q9UDW3 170 aaKnown RBP9.17□□□□□ -0.94
SDC1-206ENST00000482879 TRBV19A0A075B6N1 114 aa9.16□□□□□ -0.94
SDC1-206ENST00000482879 A0A1B0GV50 99 aa9.16□□□□□ -0.94
SDC1-206ENST00000482879 ID1P41134 155 aa9.16□□□□□ -0.94
SDC1-206ENST00000482879 BLOC1S1P78537 153 aa9.16□□□□□ -0.94
SDC1-206ENST00000482879 EGFEM1PQ0D2K5 195 aa9.16□□□□□ -0.94
SDC1-206ENST00000482879 BEAN1Q3B7T3 259 aa9.16□□□□□ -0.94
SDC1-206ENST00000482879 TMPRSS5Q9H3S3 457 aa9.16□□□□□ -0.94
SDC1-206ENST00000482879 UBQLN2Q9UHD9 624 aa9.16□□□□□ -0.94
SDC1-206ENST00000482879 ZNF256Q9Y2P7 627 aaPredicted RBP9.16□□□□□ -0.94
SDC1-206ENST00000482879 NOTCH1P46531 2555 aa9.16□□□□□ -0.94
SDC1-206ENST00000482879 SOCS3O14543 225 aa9.15□□□□□ -0.94
SDC1-206ENST00000482879 KRTAP10-11P60412 298 aa9.15□□□□□ -0.94
SDC1-206ENST00000482879 SAMD13Q5VXD3 122 aa9.15□□□□□ -0.94
SDC1-206ENST00000482879 FAM24BQ8N5W8 94 aa9.15□□□□□ -0.94
SDC1-206ENST00000482879 SAT2Q96F10 170 aaPredicted RBP9.15□□□□□ -0.94
SDC1-206ENST00000482879 TMEM167BQ9NRX6 74 aa9.15□□□□□ -0.94
SDC1-206ENST00000482879 AGRNO00468 2067 aa9.15□□□□□ -0.94
SDC1-206ENST00000482879 TRAV8-2A0A0B4J237 113 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 TRAV1-1A0A0B4J248 108 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 TEX46H3BTG2 121 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 SLC17A3O00476 420 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 ISLRO14498 428 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 ZNF253O75346 499 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 NDUFB4O95168 129 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 HBE1P02100 147 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 CD7P09564 240 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 ZNF688P0C7X2 276 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 SNRPD3P62318 126 aaKnown RBP9.14□□□□□ -0.95
SDC1-206ENST00000482879 PSG9Q00887 426 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 PDE6HQ13956 83 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 IGFL4Q6B9Z1 124 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 SUN5Q8TC36 379 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 LINC00052Q96N35 136 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 PRR25Q96S07 402 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 SLC50A1Q9BRV3 221 aa9.14□□□□□ -0.95
SDC1-206ENST00000482879 ZNF331Q9NQX6 463 aaPredicted RBP9.14□□□□□ -0.95
SDC1-206ENST00000482879 HLA-DMBP28068 263 aa9.13□□□□□ -0.95
SDC1-206ENST00000482879 PSMB3P49720 205 aa9.13□□□□□ -0.95
SDC1-206ENST00000482879 CMC4P56277 68 aaPredicted RBP9.13□□□□□ -0.95
SDC1-206ENST00000482879 CD81P60033 236 aa9.13□□□□□ -0.95
SDC1-206ENST00000482879 RANP62826 216 aaKnown RBP9.13□□□□□ -0.95
SDC1-206ENST00000482879 IFITM2Q01629 132 aa9.13□□□□□ -0.95
SDC1-206ENST00000482879 PSMG4Q5JS54 123 aa9.13□□□□□ -0.95
SDC1-206ENST00000482879 GTSCR1Q86UQ5 136 aa9.13□□□□□ -0.95
SDC1-206ENST00000482879 RNF182Q8N6D2 247 aa9.13□□□□□ -0.95
SDC1-206ENST00000482879 DNHD1Q96M86 4753 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 OR11H12B2RN74 326 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 DEFB131AP59861 70 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 CCL20P78556 96 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 PSG3Q16557 428 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 LYPD1Q8N2G4 141 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 EXOC3-AS1Q8N2X6 119 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 PCNPQ8WW12 178 aaKnown RBP9.12□□□□□ -0.95
SDC1-206ENST00000482879 C20orf173Q96LM9 149 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 Q9H3A6 140 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 AAMDCQ9H7C9 122 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 MAP6D1Q9H9H5 199 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 CLEC5AQ9NY25 188 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 NBEAL1Q6ZS30 2694 aa9.12□□□□□ -0.95
SDC1-206ENST00000482879 PGPA6NDG6 321 aa9.11□□□□□ -0.95
SDC1-206ENST00000482879 PPT1P50897 306 aa9.11□□□□□ -0.95
SDC1-206ENST00000482879 UBE2G2P60604 165 aa9.11□□□□□ -0.95
SDC1-206ENST00000482879 ICAM4Q14773 271 aa9.11□□□□□ -0.95
SDC1-206ENST00000482879 ODF3L2Q3SX64 289 aa9.11□□□□□ -0.95
SDC1-206ENST00000482879 KPRPQ5T749 579 aaPredicted RBP9.11□□□□□ -0.95
SDC1-206ENST00000482879 ZNF767PQ75MW2 155 aa9.11□□□□□ -0.95
SDC1-206ENST00000482879 ZNF738Q8NE65 137 aa9.11□□□□□ -0.95
SDC1-206ENST00000482879 OTORQ9NRC9 128 aa9.11□□□□□ -0.95
SDC1-206ENST00000482879 PRELID1Q9Y255 219 aa9.11□□□□□ -0.95
SDC1-206ENST00000482879 ZNF705FA8MVS1 300 aaPredicted RBP9.1□□□□□ -0.95
SDC1-206ENST00000482879 RAB14P61106 215 aa9.1□□□□□ -0.95
SDC1-206ENST00000482879 APRG1Q8IVJ8 170 aa9.1□□□□□ -0.95
SDC1-206ENST00000482879 Q8N1Y9 231 aa9.1□□□□□ -0.95
SDC1-206ENST00000482879 FAM110AQ9BQ89 295 aa9.1□□□□□ -0.95
SDC1-206ENST00000482879 C19orf73Q9NVV2 129 aa9.1□□□□□ -0.95
SDC1-206ENST00000482879 GNG13Q9P2W3 67 aa9.1□□□□□ -0.95
SDC1-206ENST00000482879 YTHDF2Q9Y5A9 579 aaKnown RBP9.1□□□□□ -0.95
SDC1-206ENST00000482879 A0A1W2PRE2 83 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 FAM74A7A6NL05 159 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 M0R3E3 92 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 PAGE4O60829 102 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 PRB2P02812 416 aaPredicted RBP9.09□□□□□ -0.95
SDC1-206ENST00000482879 NMBP08949 121 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 PRB4P10163 310 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms