RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 VGLL1Q99990 258 aa14.91□□□□□ -0.02
CCDC88B-207ENST00000479965 CEP250Q9BV73 2442 aa14.91□□□□□ -0.02
CCDC88B-207ENST00000479965 NDUFS7O75251 213 aa14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 PRB3Q04118 309 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 PRSS1P07477 247 aa14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 FTH1P19P0C7X4 201 aa14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 ETDBQ3ZM63 59 aa14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 K7EQM0 130 aa14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 C1orf162Q8NEQ5 155 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 WFDC12Q8WWY7 111 aa14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 CHAC1Q9BUX1 264 aa14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 SPRY4Q9C004 299 aa14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 PROCRQ9UNN8 238 aa14.9□□□□□ -0.02
CCDC88B-207ENST00000479965 PKDREJQ9NTG1 2253 aa14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 TM4SF5O14894 197 aa14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 NPYP01303 97 aa14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 MRPL51Q4U2R6 128 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 FAM104BQ5XKR9 115 aa14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 AMTNQ6UX39 209 aa14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 TMEM133Q9H2Q1 129 aa14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 BMI1P35226 326 aa14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 CD300EQ496F6 205 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 GTSCR1Q86UQ5 136 aa14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 ARPC1AQ92747 370 aa14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 ZNF71Q9NQZ8 489 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-207ENST00000479965 H3BMG7 143 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 IGLV2-23P01705 113 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 LINC00312Q9Y6C7 94 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 INS-IGF2F8WCM5 200 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 CNTFRP26992 372 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 FCER1GP30273 86 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 RPL27AP46776 148 aaKnown RBP14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 TWIST1Q15672 202 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 ATP6V0BQ99437 205 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 TMEM189A5PLL7 270 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 J3QR89 54 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 SLC25A15Q9Y619 301 aa14.88□□□□□ -0.03
CCDC88B-207ENST00000479965 IGHV1-46P01743 117 aa14.87□□□□□ -0.03
CCDC88B-207ENST00000479965 RASL11BQ9BPW5 248 aa14.87□□□□□ -0.03
CCDC88B-207ENST00000479965 SPAARA0A1B0GVQ0 90 aa14.87□□□□□ -0.03
CCDC88B-207ENST00000479965 A0A1B0GW15 77 aa14.87□□□□□ -0.03
CCDC88B-207ENST00000479965 C19orf67A6NJJ6 358 aa14.86□□□□□ -0.03
CCDC88B-207ENST00000479965 C16orf54Q6UWD8 224 aa14.86□□□□□ -0.03
CCDC88B-207ENST00000479965 RAB9AP51151 201 aa14.86□□□□□ -0.03
CCDC88B-207ENST00000479965 DLX1P56177 255 aa14.86□□□□□ -0.03
CCDC88B-207ENST00000479965 CRYGCP07315 174 aa14.86□□□□□ -0.03
CCDC88B-207ENST00000479965 GLRXP35754 106 aa14.86□□□□□ -0.03
CCDC88B-207ENST00000479965 CCL11P51671 97 aa14.86□□□□□ -0.03
CCDC88B-207ENST00000479965 TMEM200BQ69YZ2 307 aa14.86□□□□□ -0.03
CCDC88B-207ENST00000479965 NGBQ9NPG2 151 aa14.86□□□□□ -0.03
CCDC88B-207ENST00000479965 DMXL2Q8TDJ6 3036 aa14.85□□□□□ -0.03
CCDC88B-207ENST00000479965 Q6AWC8 147 aa14.85□□□□□ -0.03
CCDC88B-207ENST00000479965 S4R3C0 116 aa14.85□□□□□ -0.03
CCDC88B-207ENST00000479965 TRBV19A0A075B6N1 114 aa14.84□□□□□ -0.03
CCDC88B-207ENST00000479965 CCDC144NLQ6NUI1 221 aa14.84□□□□□ -0.03
CCDC88B-207ENST00000479965 RAI1Q7Z5J4 1906 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-207ENST00000479965 TRBV25-1A0A075B6N4 114 aa14.84□□□□□ -0.03
CCDC88B-207ENST00000479965 EVI2AP22794 236 aa14.84□□□□□ -0.03
CCDC88B-207ENST00000479965 LEPP41159 167 aa14.84□□□□□ -0.03
CCDC88B-207ENST00000479965 CKS1BP61024 79 aa14.84□□□□□ -0.03
CCDC88B-207ENST00000479965 ATP5G2Q06055 141 aa14.84□□□□□ -0.03
CCDC88B-207ENST00000479965 TMEM75Q8N9X5 138 aa14.83□□□□□ -0.03
CCDC88B-207ENST00000479965 ZNF479Q96JC4 524 aa14.83□□□□□ -0.03
CCDC88B-207ENST00000479965 LINC00574Q9H8X3 128 aa14.83□□□□□ -0.03
CCDC88B-207ENST00000479965 PLSCR4Q9NRQ2 329 aa14.83□□□□□ -0.03
CCDC88B-207ENST00000479965 SPANXB1Q9NS25 103 aaPredicted RBP14.83□□□□□ -0.03
CCDC88B-207ENST00000479965 ZC2HC1BQ5TFG8 222 aa14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 ZNF493Q6ZR52 646 aa14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 SPAG8Q99932 426 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 FOXC2Q99958 501 aa14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 SCNM1Q9BWG6 230 aa14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 TMEM160Q9NX00 188 aa14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 PRSS47A8MTI9 375 aa14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 PRR33A8MZF0 331 aa14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 INSL3P51460 131 aa14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 LCNL1Q6ZST4 164 aa14.83□□□□□ -0.04
CCDC88B-207ENST00000479965 WI2-2373I1.2A0A1W2PRP0 233 aa14.82□□□□□ -0.04
CCDC88B-207ENST00000479965 TRIOBPQ9H2D6 2365 aa14.82□□□□□ -0.04
CCDC88B-207ENST00000479965 SH2D1AO60880 128 aa14.82□□□□□ -0.04
CCDC88B-207ENST00000479965 GAS8-AS1O95177 125 aa14.82□□□□□ -0.04
CCDC88B-207ENST00000479965 SCGB1A1P11684 91 aa14.82□□□□□ -0.04
CCDC88B-207ENST00000479965 LAMTOR5O43504 91 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 CEACAM3P40198 252 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 SIGLEC15Q6ZMC9 328 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 MSRB1Q9NZV6 116 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 TMEM30BQ3MIR4 351 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 GATA4P43694 442 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 ZNF562Q6V9R5 426 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 CEND1Q8N111 149 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 GATD1Q8NB37 220 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 ZZEF1O43149 2961 aa14.81□□□□□ -0.04
CCDC88B-207ENST00000479965 IGKCP01834 107 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 HOXB4P17483 251 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 WT1P19544 449 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 PPIFP30405 207 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 MRGPRG-AS1Q2M3A8 158 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 TDHQ8IZJ6 230 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 TMEM14CQ9P0S9 112 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 CACNA1GO43497 2377 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms