RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 PRR20DP86480 221 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 PRR20BP86481 221 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 PRR20AP86496 221 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 BAXQ07812 192 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 OPCMLQ14982 345 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 C12orf74Q32Q52 190 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 C10orf113Q5VZT2 155 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 OR11H7Q8NGC8 314 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 RNF24Q9Y225 148 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 VPS13DQ5THJ4 4388 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 IGLL5B9A064 214 aa12.87□□□□□ -0.35
UPF3A-203ENST00000474056 DUSP14O95147 198 aaKnown RBP12.87□□□□□ -0.35
UPF3A-203ENST00000474056 HBG1P69891 147 aa12.87□□□□□ -0.35
UPF3A-203ENST00000474056 HBG2P69892 147 aa12.87□□□□□ -0.35
UPF3A-203ENST00000474056 RAB31Q13636 194 aa12.87□□□□□ -0.35
UPF3A-203ENST00000474056 LRRC20Q8TCA0 184 aa12.87□□□□□ -0.35
UPF3A-203ENST00000474056 NMES1Q9C002 83 aa12.87□□□□□ -0.35
UPF3A-203ENST00000474056 TRAV10A0A0B4J240 114 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 SMIM9A6NGZ8 99 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 M0R2Z0 102 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 CXCL2P19875 107 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 EMP1P54849 157 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 B2MP61769 119 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 PSG3Q16557 428 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 SPINK13Q1W4C9 94 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 LRRC37A5PQ49AS3 106 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 LGALS9CQ6DKI2 356 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 LCN15Q6UWW0 184 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 Q6ZRG5 221 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 BPIFA4PQ86YQ2 179 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 MARVELD1Q9BSK0 173 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 BATF3Q9NR55 127 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 OR5AC2Q9NZP5 309 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 GOLT1BQ9Y3E0 138 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 RFNGQ9Y644 331 aa12.86□□□□□ -0.35
UPF3A-203ENST00000474056 H0YIZ8 118 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 H3BTX0 84 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 SLC17A3O00476 420 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 CRXO43186 299 aaPredicted RBP12.85□□□□□ -0.35
UPF3A-203ENST00000474056 FGF7P21781 194 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 RPL29P47914 159 aaKnown RBP12.85□□□□□ -0.35
UPF3A-203ENST00000474056 HIST1H1AQ02539 215 aaPredicted RBP12.85□□□□□ -0.35
UPF3A-203ENST00000474056 NHLH2Q02577 135 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 ATP6V1FQ16864 119 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 OR8A1Q8NGG7 326 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 IGF2BP2-AS1Q96M15 143 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 DNAJC4Q9NNZ3 241 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 ZNF331Q9NQX6 463 aaPredicted RBP12.85□□□□□ -0.35
UPF3A-203ENST00000474056 SLC39A9Q9NUM3 307 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 APLNQ9ULZ1 77 aa12.85□□□□□ -0.35
UPF3A-203ENST00000474056 TRAV5A0A0B4J249 113 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 TMEM189A5PLL7 270 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 RLN2P04090 185 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 DEFA1P59665 94 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 DEFA3P59666 94 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 BAP18Q8IXM2 172 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 OR1L4Q8NGR5 311 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 SLC50A1Q9BRV3 221 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 PXMP4Q9Y6I8 212 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 DNAH6Q9C0G6 4158 aa12.84□□□□□ -0.35
UPF3A-203ENST00000474056 E5RGE8 158 aa12.83□□□□□ -0.36
UPF3A-203ENST00000474056 HBE1P02100 147 aa12.83□□□□□ -0.36
UPF3A-203ENST00000474056 IGLC2P0DOY2 106 aa12.83□□□□□ -0.36
UPF3A-203ENST00000474056 H2BFSP57053 126 aa12.83□□□□□ -0.36
UPF3A-203ENST00000474056 TCTAP57738 103 aa12.83□□□□□ -0.36
UPF3A-203ENST00000474056 RPP25LQ8N5L8 163 aaKnown RBP12.83□□□□□ -0.36
UPF3A-203ENST00000474056 OR5C1Q8NGR4 320 aa12.83□□□□□ -0.36
UPF3A-203ENST00000474056 CHAC2Q8WUX2 184 aa12.83□□□□□ -0.36
UPF3A-203ENST00000474056 RPUSD4Q96CM3 377 aaKnown RBP12.83□□□□□ -0.36
UPF3A-203ENST00000474056 PFDN5Q99471 154 aa12.83□□□□□ -0.36
UPF3A-203ENST00000474056 IGHV4-4A0A075B6R2 117 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 TRAV12-2A0A075B6T6 113 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 DEFB131BA0A096LNP1 70 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 LOC102723971A0A1B0GUV8 181 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 H3BQ15 152 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 BOLA2-SMG1P6H3BVE0 249 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 INSP01308 110 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 AMBPP02760 352 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 RHOBP62745 196 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 RRN3P1Q2M238 152 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 FAM222AQ5U5X8 452 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 THAP6Q8TBB0 222 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 TMEM208Q9BTX3 173 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 NPCDR1Q9BY65 106 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 SLC25A31Q9H0C2 315 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 DKK2Q9UBU2 259 aa12.82□□□□□ -0.36
UPF3A-203ENST00000474056 PRM2P04554 102 aa12.81□□□□□ -0.36
UPF3A-203ENST00000474056 SPART-AS1P0CW21 52 aa12.81□□□□□ -0.36
UPF3A-203ENST00000474056 CYCSP99999 105 aaKnown RBP12.81□□□□□ -0.36
UPF3A-203ENST00000474056 PPP1R1CQ8WVI7 109 aa12.81□□□□□ -0.36
UPF3A-203ENST00000474056 SAT2Q96F10 170 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-203ENST00000474056 YTHDF2Q9Y5A9 579 aaKnown RBP12.81□□□□□ -0.36
UPF3A-203ENST00000474056 SSNA1O43805 119 aa12.8□□□□□ -0.36
UPF3A-203ENST00000474056 MPDU1O75352 247 aa12.8□□□□□ -0.36
UPF3A-203ENST00000474056 CLINT1Q14677 625 aa12.8□□□□□ -0.36
UPF3A-203ENST00000474056 GCSAMLQ5JQS6 135 aa12.8□□□□□ -0.36
UPF3A-203ENST00000474056 RNF126Q9BV68 326 aa12.8□□□□□ -0.36
UPF3A-203ENST00000474056 PLA2G2EQ9NZK7 142 aa12.8□□□□□ -0.36
UPF3A-203ENST00000474056 DNAH10Q8IVF4 4471 aa12.8□□□□□ -0.36
UPF3A-203ENST00000474056 ZNF705GA8MUZ8 300 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms