RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 RPL12P30050 165 aaKnown RBP13.74□□□□□ -0.21
PTCD3-210ENST00000473829 Q8NAQ8 132 aa13.74□□□□□ -0.21
PTCD3-210ENST00000473829 CLUHP3Q96NS8 147 aa13.74□□□□□ -0.21
PTCD3-210ENST00000473829 PFDN5Q99471 154 aa13.74□□□□□ -0.21
PTCD3-210ENST00000473829 ATP5SQ99766 215 aa13.74□□□□□ -0.21
PTCD3-210ENST00000473829 SMIM3Q9BZL3 60 aa13.74□□□□□ -0.21
PTCD3-210ENST00000473829 SLC35B3Q9H1N7 401 aa13.74□□□□□ -0.21
PTCD3-210ENST00000473829 C11orf68Q9H3H3 251 aaKnown RBP13.74□□□□□ -0.21
PTCD3-210ENST00000473829 RNF24Q9Y225 148 aa13.74□□□□□ -0.21
PTCD3-210ENST00000473829 LYSTQ99698 3801 aa13.73□□□□□ -0.21
PTCD3-210ENST00000473829 SACSQ9NZJ4 4579 aa13.73□□□□□ -0.21
PTCD3-210ENST00000473829 A8MTW9 85 aa13.73□□□□□ -0.21
PTCD3-210ENST00000473829 ZNF705EA8MWA4 302 aaPredicted RBP13.73□□□□□ -0.21
PTCD3-210ENST00000473829 SLC17A3O00476 420 aa13.73□□□□□ -0.21
PTCD3-210ENST00000473829 ZNF705DP0CH99 300 aaPredicted RBP13.73□□□□□ -0.21
PTCD3-210ENST00000473829 ZNF705BP0CI00 300 aaPredicted RBP13.73□□□□□ -0.21
PTCD3-210ENST00000473829 IGLC2P0DOY2 106 aa13.73□□□□□ -0.21
PTCD3-210ENST00000473829 NUTF2P61970 127 aaKnown RBP13.73□□□□□ -0.21
PTCD3-210ENST00000473829 EBLN2Q6P2I7 272 aa13.73□□□□□ -0.21
PTCD3-210ENST00000473829 BPIFA4PQ86YQ2 179 aa13.73□□□□□ -0.21
PTCD3-210ENST00000473829 RYR2Q92736 4967 aa13.73□□□□□ -0.21
PTCD3-210ENST00000473829 H3BQ15 152 aa13.72□□□□□ -0.21
PTCD3-210ENST00000473829 PMS2P11Q13670 270 aa13.72□□□□□ -0.21
PTCD3-210ENST00000473829 OXA1LQ15070 435 aa13.72□□□□□ -0.21
PTCD3-210ENST00000473829 SPATA31B1PQ5VZV4 182 aa13.72□□□□□ -0.21
PTCD3-210ENST00000473829 AMTNQ6UX39 209 aa13.72□□□□□ -0.21
PTCD3-210ENST00000473829 ZNF738Q8NE65 137 aa13.72□□□□□ -0.21
PTCD3-210ENST00000473829 WFDC1Q9HC57 220 aa13.72□□□□□ -0.21
PTCD3-210ENST00000473829 ZNF331Q9NQX6 463 aaPredicted RBP13.72□□□□□ -0.21
PTCD3-210ENST00000473829 IGHV4-28A0A0C4DH34 117 aa13.71□□□□□ -0.21
PTCD3-210ENST00000473829 RBMY1A1P0DJD3 496 aaKnown RBP13.71□□□□□ -0.21
PTCD3-210ENST00000473829 RBMY1CP0DJD4 496 aa13.71□□□□□ -0.21
PTCD3-210ENST00000473829 CXCL2P19875 107 aa13.71□□□□□ -0.21
PTCD3-210ENST00000473829 CNN1P51911 297 aaKnown RBP13.71□□□□□ -0.21
PTCD3-210ENST00000473829 PSG9Q00887 426 aa13.71□□□□□ -0.21
PTCD3-210ENST00000473829 RBMY1FQ15415 496 aaKnown RBP13.71□□□□□ -0.21
PTCD3-210ENST00000473829 Q5BKY6 102 aa13.71□□□□□ -0.21
PTCD3-210ENST00000473829 LCN15Q6UWW0 184 aa13.71□□□□□ -0.21
PTCD3-210ENST00000473829 C1QTNF4Q9BXJ3 329 aa13.71□□□□□ -0.21
PTCD3-210ENST00000473829 PLECQ15149 4684 aaKnown RBP13.7□□□□□ -0.22
PTCD3-210ENST00000473829 PSG3Q16557 428 aa13.7□□□□□ -0.22
PTCD3-210ENST00000473829 LRRC20Q8TCA0 184 aa13.7□□□□□ -0.22
PTCD3-210ENST00000473829 SAT2Q96F10 170 aaPredicted RBP13.7□□□□□ -0.22
PTCD3-210ENST00000473829 MFFQ9GZY8 342 aa13.7□□□□□ -0.22
PTCD3-210ENST00000473829 HRH4Q9H3N8 390 aa13.7□□□□□ -0.22
PTCD3-210ENST00000473829 SLC50A1Q9BRV3 221 aa13.69□□□□□ -0.22
PTCD3-210ENST00000473829 ZNF586Q9NXT0 402 aa13.69□□□□□ -0.22
PTCD3-210ENST00000473829 RFNGQ9Y644 331 aa13.69□□□□□ -0.22
PTCD3-210ENST00000473829 CXorf65A6NEN9 183 aa13.68□□□□□ -0.22
PTCD3-210ENST00000473829 GIPP09681 153 aaPredicted RBP13.68□□□□□ -0.22
PTCD3-210ENST00000473829 PYYP10082 97 aa13.68□□□□□ -0.22
PTCD3-210ENST00000473829 MIFP14174 115 aa13.68□□□□□ -0.22
PTCD3-210ENST00000473829 ZNF705AQ6ZN79 300 aaPredicted RBP13.68□□□□□ -0.22
PTCD3-210ENST00000473829 MIR17HGQ75NE6 70 aa13.68□□□□□ -0.22
PTCD3-210ENST00000473829 OR8A1Q8NGG7 326 aa13.68□□□□□ -0.22
PTCD3-210ENST00000473829 SLC25A2Q9BXI2 301 aa13.68□□□□□ -0.22
PTCD3-210ENST00000473829 ZNF705FA8MVS1 300 aaPredicted RBP13.67□□□□□ -0.22
PTCD3-210ENST00000473829 DUSP14O95147 198 aaKnown RBP13.67□□□□□ -0.22
PTCD3-210ENST00000473829 NANOS2P60321 138 aaKnown RBP13.67□□□□□ -0.22
PTCD3-210ENST00000473829 HIST1H1AQ02539 215 aaPredicted RBP13.67□□□□□ -0.22
PTCD3-210ENST00000473829 RPUSD4Q96CM3 377 aaKnown RBP13.67□□□□□ -0.22
PTCD3-210ENST00000473829 FAM167A-AS1Q96KT0 104 aa13.67□□□□□ -0.22
PTCD3-210ENST00000473829 KCNIP2Q9NS61 270 aa13.67□□□□□ -0.22
PTCD3-210ENST00000473829 TMEM14CQ9P0S9 112 aa13.67□□□□□ -0.22
PTCD3-210ENST00000473829 PRAC2D3DTV9 90 aa13.66□□□□□ -0.22
PTCD3-210ENST00000473829 C17orf112F2Z3M2 114 aa13.66□□□□□ -0.22
PTCD3-210ENST00000473829 M0R2Z0 102 aa13.66□□□□□ -0.22
PTCD3-210ENST00000473829 IFNA5P01569 189 aa13.66□□□□□ -0.22
PTCD3-210ENST00000473829 SPINK13Q1W4C9 94 aa13.66□□□□□ -0.22
PTCD3-210ENST00000473829 C1orf158Q8N1D5 194 aa13.66□□□□□ -0.22
PTCD3-210ENST00000473829 PARD6GQ9BYG4 376 aaPredicted RBP13.66□□□□□ -0.22
PTCD3-210ENST00000473829 TRBV19A0A075B6N1 114 aa13.65□□□□□ -0.22
PTCD3-210ENST00000473829 IGHV3OR16-12A0A075B7B8 117 aa13.65□□□□□ -0.22
PTCD3-210ENST00000473829 NDUFB4O95168 129 aa13.65□□□□□ -0.22
PTCD3-210ENST00000473829 GUK1Q16774 197 aa13.65□□□□□ -0.22
PTCD3-210ENST00000473829 FFAR4Q5NUL3 377 aa13.65□□□□□ -0.22
PTCD3-210ENST00000473829 C11orf45Q8TAV5 145 aa13.65□□□□□ -0.22
PTCD3-210ENST00000473829 AQP10Q96PS8 301 aa13.65□□□□□ -0.22
PTCD3-210ENST00000473829 G3V3Q6 166 aa13.64□□□□□ -0.23
PTCD3-210ENST00000473829 CRXO43186 299 aaPredicted RBP13.64□□□□□ -0.23
PTCD3-210ENST00000473829 HIST1H1EP10412 219 aaKnown RBP13.64□□□□□ -0.23
PTCD3-210ENST00000473829 SCGB1C1Q8TD33 95 aa13.64□□□□□ -0.23
PTCD3-210ENST00000473829 ASB13Q8WXK3 278 aa13.64□□□□□ -0.23
PTCD3-210ENST00000473829 MRPL32Q9BYC8 188 aaKnown RBP13.64□□□□□ -0.23
PTCD3-210ENST00000473829 CELA1Q9UNI1 258 aa13.64□□□□□ -0.23
PTCD3-210ENST00000473829 ALMS1Q8TCU4 4167 aa13.64□□□□□ -0.23
PTCD3-210ENST00000473829 HYDINQ4G0P3 5121 aa13.63□□□□□ -0.23
PTCD3-210ENST00000473829 LCE6AA0A183 80 aa13.63□□□□□ -0.23
PTCD3-210ENST00000473829 BOLA2-SMG1P6H3BVE0 249 aa13.63□□□□□ -0.23
PTCD3-210ENST00000473829 ZNF253O75346 499 aa13.63□□□□□ -0.23
PTCD3-210ENST00000473829 CEMP1Q6PRD7 247 aaPredicted RBP13.63□□□□□ -0.23
PTCD3-210ENST00000473829 BAP18Q8IXM2 172 aa13.63□□□□□ -0.23
PTCD3-210ENST00000473829 IGF2BP2-AS1Q96M15 143 aa13.63□□□□□ -0.23
PTCD3-210ENST00000473829 NEU1Q99519 415 aa13.63□□□□□ -0.23
PTCD3-210ENST00000473829 FUT9Q9Y231 359 aa13.63□□□□□ -0.23
PTCD3-210ENST00000473829 DNAH1Q9P2D7 4330 aa13.62□□□□□ -0.23
PTCD3-210ENST00000473829 NUPR2A6NF83 97 aa13.62□□□□□ -0.23
PTCD3-210ENST00000473829 EIF3GO75821 320 aaKnown RBP eCLIP13.62□□□□□ -0.23
PTCD3-210ENST00000473829 OR2T35Q8NGX2 323 aa13.62□□□□□ -0.23
PTCD3-210ENST00000473829 PHLDA1Q8WV24 401 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms