RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 SLC51BQ86UW2 128 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 APRG1Q8IVJ8 170 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 RAB24Q969Q5 203 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 C20orf173Q96LM9 149 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 TMEM14CQ9P0S9 112 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 A0A1W2PPV4 95 aa10.98□□□□□ -0.65
COL9A3-209ENST00000469852 MBP02144 154 aa10.98□□□□□ -0.65
COL9A3-209ENST00000469852 PRB4P10163 310 aaPredicted RBP10.98□□□□□ -0.65
COL9A3-209ENST00000469852 DEFB131AP59861 70 aa10.98□□□□□ -0.65
COL9A3-209ENST00000469852 EIF5AP63241 154 aaKnown RBP10.98□□□□□ -0.65
COL9A3-209ENST00000469852 AKR1C8PQ5T2L2 129 aa10.98□□□□□ -0.65
COL9A3-209ENST00000469852 RNF182Q8N6D2 247 aa10.98□□□□□ -0.65
COL9A3-209ENST00000469852 FXYD5Q96DB9 178 aa10.98□□□□□ -0.65
COL9A3-209ENST00000469852 OR51M1Q9H341 326 aa10.98□□□□□ -0.65
COL9A3-209ENST00000469852 RNF24Q9Y225 148 aa10.98□□□□□ -0.65
COL9A3-209ENST00000469852 OR11H12B2RN74 326 aa10.97□□□□□ -0.65
COL9A3-209ENST00000469852 OR7C2O60412 319 aa10.97□□□□□ -0.65
COL9A3-209ENST00000469852 NDUFB4O95168 129 aa10.97□□□□□ -0.65
COL9A3-209ENST00000469852 PSMG4Q5JS54 123 aa10.97□□□□□ -0.65
COL9A3-209ENST00000469852 SAT2Q96F10 170 aaPredicted RBP10.97□□□□□ -0.65
COL9A3-209ENST00000469852 C16orf92Q96LL3 132 aa10.97□□□□□ -0.65
COL9A3-209ENST00000469852 PAXXQ9BUH6 204 aa10.97□□□□□ -0.65
COL9A3-209ENST00000469852 HRH4Q9H3N8 390 aa10.97□□□□□ -0.65
COL9A3-209ENST00000469852 TRBV19A0A075B6N1 114 aa10.96□□□□□ -0.65
COL9A3-209ENST00000469852 STAG3L2P0CL84 134 aa10.96□□□□□ -0.65
COL9A3-209ENST00000469852 STAG3L3P0CL85 134 aa10.96□□□□□ -0.65
COL9A3-209ENST00000469852 ARL14EPLP0DKL9 152 aa10.96□□□□□ -0.65
COL9A3-209ENST00000469852 IGHV4-30-4P0DP06 118 aa10.96□□□□□ -0.65
COL9A3-209ENST00000469852 HIST1H1EP10412 219 aaKnown RBP10.96□□□□□ -0.65
COL9A3-209ENST00000469852 MEOX2P50222 304 aa10.96□□□□□ -0.65
COL9A3-209ENST00000469852 KHDC3LQ587J8 217 aa10.96□□□□□ -0.65
COL9A3-209ENST00000469852 BLNKQ8WV28 456 aa10.96□□□□□ -0.65
COL9A3-209ENST00000469852 RNF141Q8WVD5 230 aa10.96□□□□□ -0.65
COL9A3-209ENST00000469852 ACTR3CQ9C0K3 210 aaPredicted RBP10.96□□□□□ -0.65
COL9A3-209ENST00000469852 ZNF331Q9NQX6 463 aaPredicted RBP10.96□□□□□ -0.65
COL9A3-209ENST00000469852 AGRNO00468 2067 aa10.96□□□□□ -0.66
COL9A3-209ENST00000469852 ISLRO14498 428 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 PSMB3P49720 205 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 TAS2R45P59539 299 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 UBE2L3P68036 154 aaKnown RBP10.95□□□□□ -0.66
COL9A3-209ENST00000469852 FAM74A1Q5RGS3 127 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 LCN15Q6UWW0 184 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 MRAPQ8TCY5 172 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 PHYHIPLQ96FC7 376 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 LINC00052Q96N35 136 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 FAM110AQ9BQ89 295 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 SRD5A3Q9H8P0 318 aa10.95□□□□□ -0.66
COL9A3-209ENST00000469852 CTXND1A0A1B0GTU2 59 aa10.94□□□□□ -0.66
COL9A3-209ENST00000469852 KNCNA6PVL3 124 aa10.94□□□□□ -0.66
COL9A3-209ENST00000469852 F6UB75 175 aa10.94□□□□□ -0.66
COL9A3-209ENST00000469852 NBEAP1P0C6P0 100 aa10.94□□□□□ -0.66
COL9A3-209ENST00000469852 C4BPBP20851 252 aa10.94□□□□□ -0.66
COL9A3-209ENST00000469852 ID1P41134 155 aa10.94□□□□□ -0.66
COL9A3-209ENST00000469852 FGF8P55075 233 aaPredicted RBP10.94□□□□□ -0.66
COL9A3-209ENST00000469852 SNRPD3P62318 126 aaKnown RBP10.94□□□□□ -0.66
COL9A3-209ENST00000469852 GDF5OSQ5U4N7 250 aa10.94□□□□□ -0.66
COL9A3-209ENST00000469852 FAM213BQ8TBF2 198 aa10.94□□□□□ -0.66
COL9A3-209ENST00000469852 DNAH9Q9NYC9 4486 aa10.93□□□□□ -0.66
COL9A3-209ENST00000469852 RBMY1BA6NDE4 496 aaKnown RBP10.93□□□□□ -0.66
COL9A3-209ENST00000469852 RBMY1EA6NEQ0 496 aaKnown RBP10.93□□□□□ -0.66
COL9A3-209ENST00000469852 UMAD1C9J7I0 102 aa10.93□□□□□ -0.66
COL9A3-209ENST00000469852 RBMY1DP0C7P1 496 aaKnown RBP10.93□□□□□ -0.66
COL9A3-209ENST00000469852 GUK1Q16774 197 aa10.93□□□□□ -0.66
COL9A3-209ENST00000469852 DEFB121Q5J5C9 76 aa10.93□□□□□ -0.66
COL9A3-209ENST00000469852 ALKAL2Q6UX46 152 aa10.93□□□□□ -0.66
COL9A3-209ENST00000469852 PQLC2Q6ZP29 291 aa10.93□□□□□ -0.66
COL9A3-209ENST00000469852 LRRC20Q8TCA0 184 aa10.93□□□□□ -0.66
COL9A3-209ENST00000469852 TMPRSS5Q9H3S3 457 aa10.93□□□□□ -0.66
COL9A3-209ENST00000469852 MAP1LC3B2A6NCE7 125 aa10.92□□□□□ -0.66
COL9A3-209ENST00000469852 ZNF705FA8MVS1 300 aaPredicted RBP10.92□□□□□ -0.66
COL9A3-209ENST00000469852 FRMD6-AS1P0C7T7 363 aa10.92□□□□□ -0.66
COL9A3-209ENST00000469852 GCHFRP30047 84 aa10.92□□□□□ -0.66
COL9A3-209ENST00000469852 SULT1A2P50226 295 aa10.92□□□□□ -0.66
COL9A3-209ENST00000469852 PSG3Q16557 428 aa10.92□□□□□ -0.66
COL9A3-209ENST00000469852 EXOC3-AS1Q8N2X6 119 aa10.92□□□□□ -0.66
COL9A3-209ENST00000469852 SLC50A1Q9BRV3 221 aa10.92□□□□□ -0.66
COL9A3-209ENST00000469852 MAP1LC3BQ9GZQ8 125 aa10.92□□□□□ -0.66
COL9A3-209ENST00000469852 A0A1B0GV50 99 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 A8MZ25 164 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 PRAC2D3DTV9 90 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 M0R3E3 92 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 ZNF253O75346 499 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 CXorf1O96002 111 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 ZNF705DP0CH99 300 aaPredicted RBP10.91□□□□□ -0.66
COL9A3-209ENST00000469852 ZNF705BP0CI00 300 aaPredicted RBP10.91□□□□□ -0.66
COL9A3-209ENST00000469852 CMC4P56277 68 aaPredicted RBP10.91□□□□□ -0.66
COL9A3-209ENST00000469852 PDE6HQ13956 83 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 ACTL10Q5JWF8 245 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 SAMD13Q5VXD3 122 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 EIF5AL1Q6IS14 154 aaKnown RBP10.91□□□□□ -0.66
COL9A3-209ENST00000469852 LINC00322Q6ZN03 302 aaPredicted RBP10.91□□□□□ -0.66
COL9A3-209ENST00000469852 SUN5Q8TC36 379 aa10.91□□□□□ -0.66
COL9A3-209ENST00000469852 RPL35AP18077 110 aaKnown RBP10.9□□□□□ -0.66
COL9A3-209ENST00000469852 RANP62826 216 aaKnown RBP10.9□□□□□ -0.66
COL9A3-209ENST00000469852 DPPA3Q6W0C5 159 aa10.9□□□□□ -0.66
COL9A3-209ENST00000469852 IQCF2Q8IXL9 164 aa10.9□□□□□ -0.66
COL9A3-209ENST00000469852 ZNF738Q8NE65 137 aa10.9□□□□□ -0.66
COL9A3-209ENST00000469852 MBD3L1Q8WWY6 194 aa10.9□□□□□ -0.66
COL9A3-209ENST00000469852 SAV1Q9H4B6 383 aaPredicted RBP10.9□□□□□ -0.66
COL9A3-209ENST00000469852 TUBA4BQ9H853 241 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms