RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 TRBV19A0A075B6N1 114 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 H3BQ15 152 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 CXorf1O96002 111 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 PYYP10082 97 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 ID1P41134 155 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 CD81P60033 236 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 SNRPD3P62318 126 aaKnown RBP11.33□□□□□ -0.6
NPHP4-205ENST00000466897 SUN5Q8TC36 379 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 RNF141Q8WVD5 230 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 SAT2Q96F10 170 aaPredicted RBP11.33□□□□□ -0.6
NPHP4-205ENST00000466897 ZNF331Q9NQX6 463 aaPredicted RBP11.33□□□□□ -0.6
NPHP4-205ENST00000466897 C19orf73Q9NVV2 129 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 ZNF586Q9NXT0 402 aa11.33□□□□□ -0.6
NPHP4-205ENST00000466897 NOTCH1P46531 2555 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 CD7P09564 240 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 NBEAP1P0C6P0 100 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 ARL14EPLP0DKL9 152 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 TFPI2P48307 235 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 UBE2L3P68036 154 aaKnown RBP11.32□□□□□ -0.6
NPHP4-205ENST00000466897 ODF3L2Q3SX64 289 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 SSX7Q7RTT5 188 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 WFDC3Q8IUB2 231 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 Q8N1Y9 231 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 MBD3L1Q8WWY6 194 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 PRR25Q96S07 402 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 DNAH3Q8TD57 4116 aa11.32□□□□□ -0.6
NPHP4-205ENST00000466897 OR11H12B2RN74 326 aa11.31□□□□□ -0.6
NPHP4-205ENST00000466897 FHITP49789 147 aa11.31□□□□□ -0.6
NPHP4-205ENST00000466897 PSG9Q00887 426 aa11.31□□□□□ -0.6
NPHP4-205ENST00000466897 LYPD1Q8N2G4 141 aa11.31□□□□□ -0.6
NPHP4-205ENST00000466897 FAM24BQ8N5W8 94 aa11.31□□□□□ -0.6
NPHP4-205ENST00000466897 FAM213BQ8TBF2 198 aa11.31□□□□□ -0.6
NPHP4-205ENST00000466897 C16orf92Q96LL3 132 aa11.31□□□□□ -0.6
NPHP4-205ENST00000466897 MAP6D1Q9H9H5 199 aa11.31□□□□□ -0.6
NPHP4-205ENST00000466897 TMEM167BQ9NRX6 74 aa11.31□□□□□ -0.6
NPHP4-205ENST00000466897 AURKAIP1Q9NWT8 199 aaPredicted RBP11.31□□□□□ -0.6
NPHP4-205ENST00000466897 TRAV8-2A0A0B4J237 113 aa11.3□□□□□ -0.6
NPHP4-205ENST00000466897 MAP1LC3B2A6NCE7 125 aa11.3□□□□□ -0.6
NPHP4-205ENST00000466897 HMGB3O15347 200 aaKnown RBP11.3□□□□□ -0.6
NPHP4-205ENST00000466897 NDUFB4O95168 129 aa11.3□□□□□ -0.6
NPHP4-205ENST00000466897 OR10J4P0C629 311 aa11.3□□□□□ -0.6
NPHP4-205ENST00000466897 ZNF688P0C7X2 276 aa11.3□□□□□ -0.6
NPHP4-205ENST00000466897 GCHFRP30047 84 aa11.3□□□□□ -0.6
NPHP4-205ENST00000466897 ALKAL2Q6UX46 152 aa11.3□□□□□ -0.6
NPHP4-205ENST00000466897 MRPL53Q96EL3 112 aaKnown RBP11.3□□□□□ -0.6
NPHP4-205ENST00000466897 MAP1LC3BQ9GZQ8 125 aa11.3□□□□□ -0.6
NPHP4-205ENST00000466897 TRAV1-1A0A0B4J248 108 aa11.29□□□□□ -0.6
NPHP4-205ENST00000466897 A8MZ25 164 aa11.29□□□□□ -0.6
NPHP4-205ENST00000466897 SLC17A3O00476 420 aa11.29□□□□□ -0.6
NPHP4-205ENST00000466897 TEX261Q6UWH6 196 aa11.29□□□□□ -0.6
NPHP4-205ENST00000466897 LRRC20Q8TCA0 184 aa11.29□□□□□ -0.6
NPHP4-205ENST00000466897 EIF3GO75821 320 aaKnown RBP eCLIP11.28□□□□□ -0.6
NPHP4-205ENST00000466897 H2AFB1P0C5Y9 115 aa11.28□□□□□ -0.6
NPHP4-205ENST00000466897 DEFB131AP59861 70 aa11.28□□□□□ -0.6
NPHP4-205ENST00000466897 PSMG4Q5JS54 123 aa11.28□□□□□ -0.6
NPHP4-205ENST00000466897 FAM74A1Q5RGS3 127 aa11.28□□□□□ -0.6
NPHP4-205ENST00000466897 PRELID1Q9Y255 219 aa11.28□□□□□ -0.6
NPHP4-205ENST00000466897 ARL2-SNX15V9GYD0 113 aa11.28□□□□□ -0.6
NPHP4-205ENST00000466897 TEX46H3BTG2 121 aa11.27□□□□□ -0.61
NPHP4-205ENST00000466897 HBE1P02100 147 aa11.27□□□□□ -0.61
NPHP4-205ENST00000466897 PSG3Q16557 428 aa11.27□□□□□ -0.61
NPHP4-205ENST00000466897 ARL6IP6Q8N6S5 226 aa11.27□□□□□ -0.61
NPHP4-205ENST00000466897 SFT2D1Q8WV19 159 aa11.27□□□□□ -0.61
NPHP4-205ENST00000466897 BLNKQ8WV28 456 aa11.27□□□□□ -0.61
NPHP4-205ENST00000466897 C20orf173Q96LM9 149 aa11.27□□□□□ -0.61
NPHP4-205ENST00000466897 AAMDCQ9H7C9 122 aa11.27□□□□□ -0.61
NPHP4-205ENST00000466897 UBQLN2Q9UHD9 624 aa11.27□□□□□ -0.61
NPHP4-205ENST00000466897 A0A1W2PRE2 83 aa11.26□□□□□ -0.61
NPHP4-205ENST00000466897 ZNF705EA8MWA4 302 aaPredicted RBP11.26□□□□□ -0.61
NPHP4-205ENST00000466897 H3BTX0 84 aa11.26□□□□□ -0.61
NPHP4-205ENST00000466897 K7EIL1 84 aa11.26□□□□□ -0.61
NPHP4-205ENST00000466897 IFNA7P01567 189 aa11.26□□□□□ -0.61
NPHP4-205ENST00000466897 SNRPCP09234 159 aaKnown RBP11.26□□□□□ -0.61
NPHP4-205ENST00000466897 BLOC1S1P78537 153 aa11.26□□□□□ -0.61
NPHP4-205ENST00000466897 FOXI2Q6ZQN5 318 aa11.26□□□□□ -0.61
NPHP4-205ENST00000466897 ZNF680Q8NEM1 530 aa11.26□□□□□ -0.61
NPHP4-205ENST00000466897 LINC00052Q96N35 136 aa11.26□□□□□ -0.61
NPHP4-205ENST00000466897 OTORQ9NRC9 128 aa11.26□□□□□ -0.61
NPHP4-205ENST00000466897 IGHV4-30-4P0DP06 118 aa11.25□□□□□ -0.61
NPHP4-205ENST00000466897 PPT1P50897 306 aa11.25□□□□□ -0.61
NPHP4-205ENST00000466897 FGF8P55075 233 aaPredicted RBP11.25□□□□□ -0.61
NPHP4-205ENST00000466897 RNF182Q8N6D2 247 aa11.25□□□□□ -0.61
NPHP4-205ENST00000466897 CLUHP3Q96NS8 147 aa11.25□□□□□ -0.61
NPHP4-205ENST00000466897 NKX6-2Q9C056 277 aaPredicted RBP11.25□□□□□ -0.61
NPHP4-205ENST00000466897 WFDC10AQ9H1F0 79 aa11.25□□□□□ -0.61
NPHP4-205ENST00000466897 Q9H3A6 140 aa11.25□□□□□ -0.61
NPHP4-205ENST00000466897 SAV1Q9H4B6 383 aaPredicted RBP11.25□□□□□ -0.61
NPHP4-205ENST00000466897 HLA-DRB4P13762 266 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 RANP62826 216 aaKnown RBP11.24□□□□□ -0.61
NPHP4-205ENST00000466897 PMS2P11Q13670 270 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 IGFL4Q6B9Z1 124 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 APRG1Q8IVJ8 170 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 EXOC3-AS1Q8N2X6 119 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 DEFB125Q8N687 156 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 ZNF738Q8NE65 137 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 LYPD6BQ8NI32 183 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 CITED4Q96RK1 184 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 HLA-DRB4X5D2U9 266 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 AGRNO00468 2067 aa11.24□□□□□ -0.61
NPHP4-205ENST00000466897 A0A0J9YX75 114 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms