RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 LRRC20Q8TCA0 184 aa9.5□□□□□ -0.89
COL28A1-206ENST00000465339 PXMP4Q9Y6I8 212 aa9.5□□□□□ -0.89
COL28A1-206ENST00000465339 A0A0J9YX75 114 aa9.49□□□□□ -0.89
COL28A1-206ENST00000465339 MRPS12O15235 138 aaKnown RBP9.49□□□□□ -0.89
COL28A1-206ENST00000465339 B2MP61769 119 aa9.49□□□□□ -0.89
COL28A1-206ENST00000465339 OR4B1Q8NGF8 309 aa9.49□□□□□ -0.89
COL28A1-206ENST00000465339 C20orf173Q96LM9 149 aa9.49□□□□□ -0.89
COL28A1-206ENST00000465339 NPCDR1Q9BY65 106 aa9.49□□□□□ -0.89
COL28A1-206ENST00000465339 MED28Q9H204 178 aa9.49□□□□□ -0.89
COL28A1-206ENST00000465339 C11orf68Q9H3H3 251 aaKnown RBP9.49□□□□□ -0.89
COL28A1-206ENST00000465339 TRAV8-2A0A0B4J237 113 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 ZNF705EA8MWA4 302 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-206ENST00000465339 MIFP14174 115 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 CXCL2P19875 107 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 CXCL3P19876 107 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 RPL12P30050 165 aaKnown RBP9.48□□□□□ -0.89
COL28A1-206ENST00000465339 DEFB1P60022 68 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 CLINT1Q14677 625 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 FAM78BQ5VT40 261 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 LCN15Q6UWW0 184 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 ZNF709Q8N972 641 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 THAP6Q8TBB0 222 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 KCNIP2Q9NS61 270 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 XCL2Q9UBD3 114 aa9.48□□□□□ -0.89
COL28A1-206ENST00000465339 F6UB75 175 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 DUSP14O95147 198 aaKnown RBP9.47□□□□□ -0.89
COL28A1-206ENST00000465339 IGKV3-20P01619 116 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 PSG9Q00887 426 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 PSG3Q16557 428 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 GUK1Q16774 197 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 RGS21Q2M5E4 152 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 MORN5Q5VZ52 161 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 IGFL4Q6B9Z1 124 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 RNF182Q8N6D2 247 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 SVIPQ8NHG7 77 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 ATP5SQ99766 215 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 SLC50A1Q9BRV3 221 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 WDR61Q9GZS3 305 aaKnown RBP9.47□□□□□ -0.89
COL28A1-206ENST00000465339 HRH4Q9H3N8 390 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 CLEC5AQ9NY25 188 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 MBD2Q9UBB5 411 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 HSPB11Q9Y547 144 aa9.47□□□□□ -0.89
COL28A1-206ENST00000465339 A8MTW9 85 aa9.46□□□□□ -0.9
COL28A1-206ENST00000465339 C17orf112F2Z3M2 114 aa9.46□□□□□ -0.9
COL28A1-206ENST00000465339 FCN2Q15485 313 aa9.46□□□□□ -0.9
COL28A1-206ENST00000465339 ZNF738Q8NE65 137 aa9.46□□□□□ -0.9
COL28A1-206ENST00000465339 OR11H7Q8NGC8 314 aa9.46□□□□□ -0.9
COL28A1-206ENST00000465339 ASB13Q8WXK3 278 aa9.46□□□□□ -0.9
COL28A1-206ENST00000465339 ZNF331Q9NQX6 463 aaPredicted RBP9.46□□□□□ -0.9
COL28A1-206ENST00000465339 TRAV5A0A0B4J249 113 aa9.45□□□□□ -0.9
COL28A1-206ENST00000465339 CXorf65A6NEN9 183 aa9.45□□□□□ -0.9
COL28A1-206ENST00000465339 IFNA5P01569 189 aa9.45□□□□□ -0.9
COL28A1-206ENST00000465339 AMBPP02760 352 aa9.45□□□□□ -0.9
COL28A1-206ENST00000465339 IGLC2P0DOY2 106 aa9.45□□□□□ -0.9
COL28A1-206ENST00000465339 Q8NAQ8 132 aa9.45□□□□□ -0.9
COL28A1-206ENST00000465339 C11orf45Q8TAV5 145 aa9.45□□□□□ -0.9
COL28A1-206ENST00000465339 MFFQ9GZY8 342 aa9.45□□□□□ -0.9
COL28A1-206ENST00000465339 X6R8D5 127 aa9.45□□□□□ -0.9
COL28A1-206ENST00000465339 CSMD3Q7Z407 3707 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 IGHV4-28A0A0C4DH34 117 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 NUPR2A6NF83 97 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 SMIM9A6NGZ8 99 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 H3BQ15 152 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 CNN1P51911 297 aaKnown RBP9.44□□□□□ -0.9
COL28A1-206ENST00000465339 FXYD7P58549 80 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 ZNF705AQ6ZN79 300 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-206ENST00000465339 OR8A1Q8NGG7 326 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 SCGB1C1Q8TD33 95 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 RPUSD4Q96CM3 377 aaKnown RBP9.44□□□□□ -0.9
COL28A1-206ENST00000465339 SAT2Q96F10 170 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-206ENST00000465339 NEU1Q99519 415 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 PARD6GQ9BYG4 376 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-206ENST00000465339 SLC35B3Q9H1N7 401 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 TMEM14CQ9P0S9 112 aa9.44□□□□□ -0.9
COL28A1-206ENST00000465339 DEFB4AO15263 64 aa9.43□□□□□ -0.9
COL28A1-206ENST00000465339 GIPP09681 153 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-206ENST00000465339 RBMY1A1P0DJD3 496 aaKnown RBP9.43□□□□□ -0.9
COL28A1-206ENST00000465339 RBMY1CP0DJD4 496 aa9.43□□□□□ -0.9
COL28A1-206ENST00000465339 HIST1H1EP10412 219 aaKnown RBP9.43□□□□□ -0.9
COL28A1-206ENST00000465339 HLA-DMBP28068 263 aa9.43□□□□□ -0.9
COL28A1-206ENST00000465339 PMS2P11Q13670 270 aa9.43□□□□□ -0.9
COL28A1-206ENST00000465339 OXA1LQ15070 435 aa9.43□□□□□ -0.9
COL28A1-206ENST00000465339 RBMY1FQ15415 496 aaKnown RBP9.43□□□□□ -0.9
COL28A1-206ENST00000465339 CEMP1Q6PRD7 247 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-206ENST00000465339 AMTNQ6UX39 209 aa9.43□□□□□ -0.9
COL28A1-206ENST00000465339 SMIM3Q9BZL3 60 aa9.43□□□□□ -0.9
COL28A1-206ENST00000465339 ZNF705FA8MVS1 300 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-206ENST00000465339 ZNF253O75346 499 aa9.42□□□□□ -0.9
COL28A1-206ENST00000465339 SNRPCP09234 159 aaKnown RBP9.42□□□□□ -0.9
COL28A1-206ENST00000465339 ZNF705DP0CH99 300 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-206ENST00000465339 ZNF705BP0CI00 300 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-206ENST00000465339 HIST1H1AQ02539 215 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-206ENST00000465339 GCSAMLQ5JQS6 135 aa9.42□□□□□ -0.9
COL28A1-206ENST00000465339 IGF2BP2-AS1Q96M15 143 aa9.42□□□□□ -0.9
COL28A1-206ENST00000465339 MRPL32Q9BYC8 188 aaKnown RBP9.42□□□□□ -0.9
COL28A1-206ENST00000465339 PPP1R14DQ9NXH3 145 aa9.42□□□□□ -0.9
COL28A1-206ENST00000465339 ZNF586Q9NXT0 402 aa9.42□□□□□ -0.9
COL28A1-206ENST00000465339 KLK5Q9Y337 293 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-206ENST00000465339 GOLT1BQ9Y3E0 138 aa9.42□□□□□ -0.9
COL28A1-206ENST00000465339 TRBV19A0A075B6N1 114 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms