RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 KNCNA6PVL3 124 aa13.02□□□□□ -0.33
COL7A1-205ENST00000465238 ACOT6Q3I5F7 207 aaPredicted RBP13.02□□□□□ -0.33
COL7A1-205ENST00000465238 ACTL10Q5JWF8 245 aa13.02□□□□□ -0.33
COL7A1-205ENST00000465238 RPL7L1Q6DKI1 246 aaKnown RBP13.02□□□□□ -0.33
COL7A1-205ENST00000465238 OR11H4Q8NGC9 324 aa13.02□□□□□ -0.33
COL7A1-205ENST00000465238 FUT9Q9Y231 359 aa13.02□□□□□ -0.33
COL7A1-205ENST00000465238 TP53TG1Q9Y2A0 90 aa13.02□□□□□ -0.33
COL7A1-205ENST00000465238 RFNGQ9Y644 331 aa13.02□□□□□ -0.33
COL7A1-205ENST00000465238 KIR2DL5BA0A0G2JN68 375 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 KIR2DL5BA0A0G2JPC4 375 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 SNRPCP09234 159 aaKnown RBP13.01□□□□□ -0.33
COL7A1-205ENST00000465238 ATP6V0CP27449 155 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 RHOBP62745 196 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 SPATA31B1PQ5VZV4 182 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 LCN15Q6UWW0 184 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 Q6ZWC4 215 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 MIR17HGQ75NE6 70 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 KIR2DL5AQ8N109 375 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 KIR2DL5BQ8NHK3 375 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 PSMG3Q9BT73 122 aaPredicted RBP13.01□□□□□ -0.33
COL7A1-205ENST00000465238 RPRMQ9NS64 109 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 TMEM14CQ9P0S9 112 aa13.01□□□□□ -0.33
COL7A1-205ENST00000465238 A0A0D9SG52 128 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 UBE2CO00762 179 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 CXCL2P19875 107 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 M6PRP20645 277 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 ZNF345Q14585 488 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 GUK1Q16774 197 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 AKAP14Q86UN6 197 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 TCTE3Q8IZS6 198 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 KCNRGQ8N5I3 272 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 GNPNAT1Q96EK6 184 aaPredicted RBP13□□□□□ -0.33
COL7A1-205ENST00000465238 CSTL1Q9H114 145 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 HRH4Q9H3N8 390 aa13□□□□□ -0.33
COL7A1-205ENST00000465238 TRAV8-2A0A0B4J237 113 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 A0A1W2PPV4 95 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 IGLC2P0DOY2 106 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 IGFL4Q6B9Z1 124 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 EBLN2Q6P2I7 272 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 FOXI2Q6ZQN5 318 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 OR2G3Q8NGZ4 309 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 C20orf173Q96LM9 149 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 ARPC5LQ9BPX5 153 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 SLC50A1Q9BRV3 221 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 SLC25A2Q9BXI2 301 aa12.99□□□□□ -0.33
COL7A1-205ENST00000465238 H3BQ15 152 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 H3BTX0 84 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 SPRY2O43597 315 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 MBP02144 154 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 HIST1H1EP10412 219 aaKnown RBP12.98□□□□□ -0.33
COL7A1-205ENST00000465238 TAS2R45P59539 299 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 SERF2P84101 59 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 TRPT1Q86TN4 253 aaKnown RBP12.98□□□□□ -0.33
COL7A1-205ENST00000465238 RNF182Q8N6D2 247 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 OR10G4Q8NGN3 311 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 OR10G9Q8NGN4 311 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 OR10G7Q8NGN6 311 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 FAM167A-AS1Q96KT0 104 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 OR51M1Q9H341 326 aa12.98□□□□□ -0.33
COL7A1-205ENST00000465238 SAV1Q9H4B6 383 aaPredicted RBP12.98□□□□□ -0.33
COL7A1-205ENST00000465238 A0A0J9YWU9 116 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 CXorf65A6NEN9 183 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 H3BMM0 161 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 PYYP10082 97 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 HLA-DRB4P13762 266 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 DEFB1P60022 68 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 RAB2AP61019 212 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 PSG3Q16557 428 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 DEFB135Q30KP9 77 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 FAM122CQ6P4D5 195 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 ZNF738Q8NE65 137 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 PAXXQ9BUH6 204 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 SH3BGRL3Q9H299 93 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 ZNF331Q9NQX6 463 aaPredicted RBP12.97□□□□□ -0.33
COL7A1-205ENST00000465238 CYTL1Q9NRR1 136 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 ZNF586Q9NXT0 402 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 CLEC5AQ9NY25 188 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 HLA-DRB4X5D2U9 266 aa12.97□□□□□ -0.33
COL7A1-205ENST00000465238 KANTRA0A1W2PQU2 76 aa12.96□□□□□ -0.33
COL7A1-205ENST00000465238 NUPR2A6NF83 97 aa12.96□□□□□ -0.33
COL7A1-205ENST00000465238 OR7C2O60412 319 aa12.96□□□□□ -0.33
COL7A1-205ENST00000465238 SPP1P10451 314 aa12.96□□□□□ -0.33
COL7A1-205ENST00000465238 KHDC3LQ587J8 217 aa12.96□□□□□ -0.33
COL7A1-205ENST00000465238 GDF5OSQ5U4N7 250 aa12.96□□□□□ -0.33
COL7A1-205ENST00000465238 MORN3Q6PF18 240 aaPredicted RBP12.96□□□□□ -0.33
COL7A1-205ENST00000465238 LINC00476Q8WZB0 136 aa12.96□□□□□ -0.33
COL7A1-205ENST00000465238 SAT2Q96F10 170 aaPredicted RBP12.96□□□□□ -0.33
COL7A1-205ENST00000465238 TRBV19A0A075B6N1 114 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 A0A1B0GVG6 124 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 F6UB75 175 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 SLC17A3O00476 420 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 PFDN1O60925 122 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 CA1P00915 261 aaPredicted RBP12.95□□□□□ -0.34
COL7A1-205ENST00000465238 C1QBP02746 253 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 HLA-DMBP28068 263 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 NUTF2P61970 127 aaKnown RBP12.95□□□□□ -0.34
COL7A1-205ENST00000465238 PSG9Q00887 426 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 PMS2P11Q13670 270 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 OR4B1Q8NGF8 309 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 BLNKQ8WV28 456 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms