RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 PFDN5Q99471 154 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 RNF126Q9BV68 326 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 HRH4Q9H3N8 390 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 SLC39A9Q9NUM3 307 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 XCL2Q9UBD3 114 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 MPC2O95563 127 aa13.38□□□□□ -0.27
HOXD3-204ENST00000459979 RBMY1A1P0DJD3 496 aaKnown RBP13.38□□□□□ -0.27
HOXD3-204ENST00000459979 RBMY1CP0DJD4 496 aa13.38□□□□□ -0.27
HOXD3-204ENST00000459979 CXCL3P19876 107 aa13.38□□□□□ -0.27
HOXD3-204ENST00000459979 FGL1Q08830 312 aa13.38□□□□□ -0.27
HOXD3-204ENST00000459979 RBMY1FQ15415 496 aaKnown RBP13.38□□□□□ -0.27
HOXD3-204ENST00000459979 ZNF705AQ6ZN79 300 aaPredicted RBP13.38□□□□□ -0.27
HOXD3-204ENST00000459979 OR4B1Q8NGF8 309 aa13.38□□□□□ -0.27
HOXD3-204ENST00000459979 C11orf45Q8TAV5 145 aa13.38□□□□□ -0.27
HOXD3-204ENST00000459979 NEU1Q99519 415 aa13.38□□□□□ -0.27
HOXD3-204ENST00000459979 MFFQ9GZY8 342 aa13.38□□□□□ -0.27
HOXD3-204ENST00000459979 KMT2AQ03164 3969 aa13.38□□□□□ -0.27
HOXD3-204ENST00000459979 IGHV4-28A0A0C4DH34 117 aa13.37□□□□□ -0.27
HOXD3-204ENST00000459979 DUSP14O95147 198 aaKnown RBP13.37□□□□□ -0.27
HOXD3-204ENST00000459979 IGKV3-20P01619 116 aa13.37□□□□□ -0.27
HOXD3-204ENST00000459979 PET100P0DJ07 73 aa13.37□□□□□ -0.27
HOXD3-204ENST00000459979 FGF7P21781 194 aa13.37□□□□□ -0.27
HOXD3-204ENST00000459979 B2MP61769 119 aa13.37□□□□□ -0.27
HOXD3-204ENST00000459979 MORN5Q5VZ52 161 aa13.37□□□□□ -0.27
HOXD3-204ENST00000459979 LCN15Q6UWW0 184 aa13.37□□□□□ -0.27
HOXD3-204ENST00000459979 AMTNQ6UX39 209 aa13.37□□□□□ -0.27
HOXD3-204ENST00000459979 NPCDR1Q9BY65 106 aa13.37□□□□□ -0.27
HOXD3-204ENST00000459979 ZNF705FA8MVS1 300 aaPredicted RBP13.36□□□□□ -0.27
HOXD3-204ENST00000459979 ZNF705DP0CH99 300 aaPredicted RBP13.36□□□□□ -0.27
HOXD3-204ENST00000459979 ZNF705BP0CI00 300 aaPredicted RBP13.36□□□□□ -0.27
HOXD3-204ENST00000459979 IGLC2P0DOY2 106 aa13.36□□□□□ -0.27
HOXD3-204ENST00000459979 IGFL4Q6B9Z1 124 aa13.36□□□□□ -0.27
HOXD3-204ENST00000459979 RNF182Q8N6D2 247 aa13.36□□□□□ -0.27
HOXD3-204ENST00000459979 SLC50A1Q9BRV3 221 aa13.36□□□□□ -0.27
HOXD3-204ENST00000459979 ZNF331Q9NQX6 463 aaPredicted RBP13.36□□□□□ -0.27
HOXD3-204ENST00000459979 ALG5Q9Y673 324 aa13.36□□□□□ -0.27
HOXD3-204ENST00000459979 PXMP4Q9Y6I8 212 aa13.36□□□□□ -0.27
HOXD3-204ENST00000459979 SMIM9A6NGZ8 99 aa13.35□□□□□ -0.27
HOXD3-204ENST00000459979 DEFB4AO15263 64 aa13.35□□□□□ -0.27
HOXD3-204ENST00000459979 PSG3Q16557 428 aa13.35□□□□□ -0.27
HOXD3-204ENST00000459979 PHLDA1Q8WV24 401 aaPredicted RBP13.35□□□□□ -0.27
HOXD3-204ENST00000459979 SLC35B3Q9H1N7 401 aa13.35□□□□□ -0.27
HOXD3-204ENST00000459979 KLK5Q9Y337 293 aaPredicted RBP13.35□□□□□ -0.27
HOXD3-204ENST00000459979 CNN1P51911 297 aaKnown RBP13.34□□□□□ -0.27
HOXD3-204ENST00000459979 NANOS2P60321 138 aaKnown RBP13.34□□□□□ -0.27
HOXD3-204ENST00000459979 LRRC20Q8TCA0 184 aa13.34□□□□□ -0.27
HOXD3-204ENST00000459979 AMBPP02760 352 aa13.33□□□□□ -0.28
HOXD3-204ENST00000459979 FXYD7P58549 80 aa13.33□□□□□ -0.28
HOXD3-204ENST00000459979 GUK1Q16774 197 aa13.33□□□□□ -0.28
HOXD3-204ENST00000459979 ZNF738Q8NE65 137 aa13.33□□□□□ -0.28
HOXD3-204ENST00000459979 OR8A1Q8NGG7 326 aa13.33□□□□□ -0.28
HOXD3-204ENST00000459979 SAT2Q96F10 170 aaPredicted RBP13.33□□□□□ -0.28
HOXD3-204ENST00000459979 WDR61Q9GZS3 305 aaKnown RBP13.33□□□□□ -0.28
HOXD3-204ENST00000459979 HSPB11Q9Y547 144 aa13.33□□□□□ -0.28
HOXD3-204ENST00000459979 TRAV5A0A0B4J249 113 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 H3BQ15 152 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 ZNF253O75346 499 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 HLA-DMBP28068 263 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 CLINT1Q14677 625 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 OR11H7Q8NGC8 314 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 THAP6Q8TBB0 222 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 IGF2BP2-AS1Q96M15 143 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 KCNIP2Q9NS61 270 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 TMEM14CQ9P0S9 112 aa13.32□□□□□ -0.28
HOXD3-204ENST00000459979 RPL12P30050 165 aaKnown RBP13.31□□□□□ -0.28
HOXD3-204ENST00000459979 C1orf158Q8N1D5 194 aa13.31□□□□□ -0.28
HOXD3-204ENST00000459979 RPUSD4Q96CM3 377 aaKnown RBP13.31□□□□□ -0.28
HOXD3-204ENST00000459979 ATP5SQ99766 215 aa13.31□□□□□ -0.28
HOXD3-204ENST00000459979 MBD2Q9UBB5 411 aa13.31□□□□□ -0.28
HOXD3-204ENST00000459979 GOLT1BQ9Y3E0 138 aa13.31□□□□□ -0.28
HOXD3-204ENST00000459979 TMEM189A5PLL7 270 aa13.3□□□□□ -0.28
HOXD3-204ENST00000459979 SLC17A3O00476 420 aa13.3□□□□□ -0.28
HOXD3-204ENST00000459979 C11orf94C9JXX5 98 aa13.29□□□□□ -0.28
HOXD3-204ENST00000459979 CRXO43186 299 aaPredicted RBP13.29□□□□□ -0.28
HOXD3-204ENST00000459979 GCSAMLQ5JQS6 135 aa13.29□□□□□ -0.28
HOXD3-204ENST00000459979 MED28Q9H204 178 aa13.29□□□□□ -0.28
HOXD3-204ENST00000459979 ZNF586Q9NXT0 402 aa13.29□□□□□ -0.28
HOXD3-204ENST00000459979 RFNGQ9Y644 331 aa13.29□□□□□ -0.28
HOXD3-204ENST00000459979 C17orf112F2Z3M2 114 aa13.28□□□□□ -0.28
HOXD3-204ENST00000459979 SNRPCP09234 159 aaKnown RBP13.28□□□□□ -0.28
HOXD3-204ENST00000459979 HIST1H1EP10412 219 aaKnown RBP13.28□□□□□ -0.28
HOXD3-204ENST00000459979 HIST1H1AQ02539 215 aaPredicted RBP13.28□□□□□ -0.28
HOXD3-204ENST00000459979 PDE6HQ13956 83 aa13.28□□□□□ -0.28
HOXD3-204ENST00000459979 FCN2Q15485 313 aa13.28□□□□□ -0.28
HOXD3-204ENST00000459979 ASB13Q8WXK3 278 aa13.28□□□□□ -0.28
HOXD3-204ENST00000459979 PARD6GQ9BYG4 376 aaPredicted RBP13.28□□□□□ -0.28
HOXD3-204ENST00000459979 TRBV19A0A075B6N1 114 aa13.27□□□□□ -0.29
HOXD3-204ENST00000459979 H3BTX0 84 aa13.27□□□□□ -0.29
HOXD3-204ENST00000459979 BOLA2-SMG1P6H3BVE0 249 aa13.27□□□□□ -0.29
HOXD3-204ENST00000459979 TCTAP57738 103 aa13.27□□□□□ -0.29
HOXD3-204ENST00000459979 SPINK13Q1W4C9 94 aa13.27□□□□□ -0.29
HOXD3-204ENST00000459979 LGALS9CQ6DKI2 356 aa13.27□□□□□ -0.29
HOXD3-204ENST00000459979 FAM167A-AS1Q96KT0 104 aa13.27□□□□□ -0.29
HOXD3-204ENST00000459979 MRPL32Q9BYC8 188 aaKnown RBP13.27□□□□□ -0.29
HOXD3-204ENST00000459979 IGHV3OR16-12A0A075B7B8 117 aa13.26□□□□□ -0.29
HOXD3-204ENST00000459979 M0R2Z0 102 aa13.26□□□□□ -0.29
HOXD3-204ENST00000459979 INSP01308 110 aa13.26□□□□□ -0.29
HOXD3-204ENST00000459979 IFNA5P01569 189 aa13.26□□□□□ -0.29
HOXD3-204ENST00000459979 HBE1P02100 147 aa13.26□□□□□ -0.29
HOXD3-204ENST00000459979 C2CD4CQ8TF44 421 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms