RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 FGF22Q9HCT0 170 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 OR2W1Q9Y3N9 320 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 RNF114Q9Y508 228 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 NCKAP5O14513 1909 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 MGAQ8IWI9 3026 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 SCN8AQ9UQD0 1980 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 TDRD6O60522 2096 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 TRBV5-4A0A0C4DH59 114 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 LY6G6EA0A0G2JKS1 128 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 A8MWV9 139 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 FXYD1O00168 92 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 FCN1O00602 326 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 SERF1AO75920 110 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 PYYP10082 97 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 BRWD1-AS2P59051 145 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 EBI3Q14213 229 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 DNM1P46Q6ZS02 220 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 NFE4Q86UQ8 179 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 C17orf82Q86X59 251 aaPredicted RBP3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 PRR15Q8IV56 129 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 SLC22A24Q8N4F4 322 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 NT5CQ8TCD5 201 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 RPS4Y2Q8TD47 263 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 DCTN5Q9BTE1 182 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 LAMTOR3Q9UHA4 124 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 U3KQA8 63 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 CACNA1DQ01668 2161 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 LRP4O75096 1905 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 TEX15Q9BXT5 2789 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 AHCTF1Q8WYP5 2266 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 IGLV3-16A0A075B6K0 115 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 LIM2P55344 173 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 DGAT2L6Q6ZPD8 337 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 GTSCR1Q86UQ5 136 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 OR8B3Q8NGG8 313 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 TMEM255BQ8WV15 326 aa3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 ZFC3H1O60293 1989 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-209ENST00000456975 TRAV1-1A0A0B4J248 108 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 A8MWL6 223 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 SLC25A14O95258 325 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 IGHV3-7P01780 117 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 COX5AP20674 150 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 FAUP35544 74 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 B3GALT5-AS1P59052 145 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 LAGE3Q14657 143 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 LRRC37A5PQ49AS3 106 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 SLC25A30Q5SVS4 291 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 SUMO4Q6EEV6 95 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 Q6ZQT7 251 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 FBXL14Q8N1E6 418 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 CCL4L1Q8NHW4 92 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 MRPL30Q8TCC3 161 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 RBMXL1Q96E39 390 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 AQP10Q96PS8 301 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 DSCR8Q96T75 97 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 TAAR2Q9P1P5 351 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 TRAPPC1Q9Y5R8 145 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 F11RQ9Y624 299 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 UBR5O95071 2799 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 SPTAN1Q13813 2472 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 DOPEY1Q5JWR5 2465 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 COL12A1Q99715 3063 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 KIF26BQ2KJY2 2108 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 A0A1B0GXF2 115 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 IZUMO1RA6ND01 250 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 CCL22O00626 93 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 C1QAP02745 245 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 TCRAP04437 139 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 PAX8Q06710 450 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 ZNF322Q6U7Q0 402 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 OR10G2Q8NGC3 310 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 OR2T10Q8NGZ9 312 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 DLX4Q92988 240 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 LINC00479Q96M42 142 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 SHANK2-AS3Q9BTD1 123 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 GABARAPL3Q9BY60 117 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 PLAC1Q9HBJ0 212 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 SDF2L1Q9HCN8 221 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 TNFRSF19Q9NS68 423 aa3.74□□□□□ -1.81
CCDC88A-209ENST00000456975 COL27A1Q8IZC6 1860 aaPredicted RBP3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 TRAV12-2A0A075B6T6 113 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 F6UB75 175 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 SRSF10O75494 262 aaKnown RBP3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 CD55P08174 381 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 SMIM13P0DJ93 91 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 COX7CP15954 63 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 CRISP2P16562 243 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 HBG1P69891 147 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 HBG2P69892 147 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 ARL16Q0P5N6 197 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 ECSCRQ19T08 205 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 DEFB133Q30KQ1 61 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 UNQ9165/PRO28630Q6UXU0 137 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 RFLNBQ8N5W9 214 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 RNF182Q8N6D2 247 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 RAB37Q96AX2 223 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 CLEC7AQ9BXN2 247 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 SCRT2Q9NQ03 307 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 HHLA3Q9XRX5 114 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 ANKRD17O75179 2603 aaKnown RBP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms