RNA–Protein interactions for RNA: ENST00000456545.5

PDLIM2-215, Transcript of PDZ and LIM domain 2, human

TSL 5

Gene PDLIM2, Length 757 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM2-215	ENST00000456545	NPCDR1	Q9BY65	106 aa		13.14	□□□□□ -0.31
PDLIM2-215	ENST00000456545	TRAV5	A0A0B4J249	113 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	IGHV4-28	A0A0C4DH34	117 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	NUPR2	A6NF83	97 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	ZNF705E	A8MWA4	302 aa	Predicted RBP	13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	IFNA5	P01569	189 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	CXCL2	P19875	107 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	RHOB	P62745	196 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	PSG3	Q16557	428 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	SCGB1C1	Q8TD33	95 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	SLC50A1	Q9BRV3	221 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	SLC35B3	Q9H1N7	401 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	KCNIP2	Q9NS61	270 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	MBD2	Q9UBB5	411 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	KLK5	Q9Y337	293 aa	Predicted RBP	13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	HSPB11	Q9Y547	144 aa		13.13	□□□□□ -0.31
PDLIM2-215	ENST00000456545	JTB	O76095	146 aa		13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545	ZNF705D	P0CH99	300 aa	Predicted RBP	13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545	ZNF705B	P0CI00	300 aa	Predicted RBP	13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545	CXCL3	P19876	107 aa		13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545	MORN5	Q5VZ52	161 aa		13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545		Q8NAQ8	132 aa		13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545	ATP5S	Q99766	215 aa		13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545	SMIM3	Q9BZL3	60 aa		13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545	WDR61	Q9GZS3	305 aa	Known RBP	13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545	GOLT1B	Q9Y3E0	138 aa		13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545		X6R8D5	127 aa		13.12	□□□□□ -0.31
PDLIM2-215	ENST00000456545		H3BTX0	84 aa		13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	MRPS12	O15235	138 aa	Known RBP	13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	HLA-DMB	P28068	263 aa		13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	CNN1	P51911	297 aa	Known RBP	13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	NANOS2	P60321	138 aa	Known RBP	13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	HIST1H1A	Q02539	215 aa	Predicted RBP	13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	GUK1	Q16774	197 aa		13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	RGS21	Q2M5E4	152 aa		13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	CEMP1	Q6PRD7	247 aa	Predicted RBP	13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	TMEM208	Q9BTX3	173 aa		13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	HRH4	Q9H3N8	390 aa		13.11	□□□□□ -0.31
PDLIM2-215	ENST00000456545	DNAH7	Q8WXX0	4024 aa		13.1	□□□□□ -0.31
PDLIM2-215	ENST00000456545	AMBP	P02760	352 aa		13.1	□□□□□ -0.31
PDLIM2-215	ENST00000456545	RBMY1A1	P0DJD3	496 aa	Known RBP	13.1	□□□□□ -0.31
PDLIM2-215	ENST00000456545	RBMY1C	P0DJD4	496 aa		13.1	□□□□□ -0.31
PDLIM2-215	ENST00000456545	RBMY1F	Q15415	496 aa	Known RBP	13.1	□□□□□ -0.31
PDLIM2-215	ENST00000456545	FCN2	Q15485	313 aa		13.1	□□□□□ -0.31
PDLIM2-215	ENST00000456545	PHLDA1	Q8WV24	401 aa	Predicted RBP	13.1	□□□□□ -0.31
PDLIM2-215	ENST00000456545	RPUSD4	Q96CM3	377 aa	Known RBP	13.1	□□□□□ -0.31
PDLIM2-215	ENST00000456545	ZNF331	Q9NQX6	463 aa	Predicted RBP	13.1	□□□□□ -0.31
PDLIM2-215	ENST00000456545	LCE6A	A0A183	80 aa		13.09	□□□□□ -0.31
PDLIM2-215	ENST00000456545	OR8A1	Q8NGG7	326 aa		13.09	□□□□□ -0.31
PDLIM2-215	ENST00000456545	TIMM9	Q9Y5J7	89 aa		13.09	□□□□□ -0.31
PDLIM2-215	ENST00000456545	SMIM9	A6NGZ8	99 aa		13.08	□□□□□ -0.32
PDLIM2-215	ENST00000456545		H3BQ15	152 aa		13.08	□□□□□ -0.32
PDLIM2-215	ENST00000456545	IGLC2	P0DOY2	106 aa		13.08	□□□□□ -0.32
PDLIM2-215	ENST00000456545	GCSAML	Q5JQS6	135 aa		13.08	□□□□□ -0.32
PDLIM2-215	ENST00000456545	OR11H7	Q8NGC8	314 aa		13.08	□□□□□ -0.32
PDLIM2-215	ENST00000456545	SPINK13	Q1W4C9	94 aa		13.07	□□□□□ -0.32
PDLIM2-215	ENST00000456545	ZNF705A	Q6ZN79	300 aa	Predicted RBP	13.07	□□□□□ -0.32
PDLIM2-215	ENST00000456545	OR10J6P	Q8NGY7	276 aa		13.07	□□□□□ -0.32
PDLIM2-215	ENST00000456545	IGF2BP2-AS1	Q96M15	143 aa		13.07	□□□□□ -0.32
PDLIM2-215	ENST00000456545	NEU1	Q99519	415 aa		13.07	□□□□□ -0.32
PDLIM2-215	ENST00000456545	ZNF705F	A8MVS1	300 aa	Predicted RBP	13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545		M0R2Z0	102 aa		13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	HBE1	P02100	147 aa		13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	PRB4	P10163	310 aa	Predicted RBP	13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	HIST1H1E	P10412	219 aa	Known RBP	13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	EMP1	P54849	157 aa		13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	FFAR4	Q5NUL3	377 aa		13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	BLNK	Q8WV28	456 aa		13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	ZNF586	Q9NXT0	402 aa		13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	TMEM14C	Q9P0S9	112 aa		13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	RFNG	Q9Y644	331 aa		13.06	□□□□□ -0.32
PDLIM2-215	ENST00000456545	TMEM189	A5PLL7	270 aa		13.05	□□□□□ -0.32
PDLIM2-215	ENST00000456545		A8MTW9	85 aa		13.05	□□□□□ -0.32
PDLIM2-215	ENST00000456545	BOLA2-SMG1P6	H3BVE0	249 aa		13.05	□□□□□ -0.32
PDLIM2-215	ENST00000456545	SLC17A3	O00476	420 aa		13.05	□□□□□ -0.32
PDLIM2-215	ENST00000456545	INS	P01308	110 aa		13.05	□□□□□ -0.32
PDLIM2-215	ENST00000456545	AMTN	Q6UX39	209 aa		13.05	□□□□□ -0.32
PDLIM2-215	ENST00000456545	MIR17HG	Q75NE6	70 aa		13.05	□□□□□ -0.32
PDLIM2-215	ENST00000456545	SAT2	Q96F10	170 aa	Predicted RBP	13.05	□□□□□ -0.32
PDLIM2-215	ENST00000456545	MRPL32	Q9BYC8	188 aa	Known RBP	13.05	□□□□□ -0.32
PDLIM2-215	ENST00000456545	PYY	P10082	97 aa		13.04	□□□□□ -0.32
PDLIM2-215	ENST00000456545	RRN3P1	Q2M238	152 aa		13.04	□□□□□ -0.32
PDLIM2-215	ENST00000456545	C1orf158	Q8N1D5	194 aa		13.04	□□□□□ -0.32
PDLIM2-215	ENST00000456545	ASB13	Q8WXK3	278 aa		13.04	□□□□□ -0.32
PDLIM2-215	ENST00000456545	OR51M1	Q9H341	326 aa		13.04	□□□□□ -0.32
PDLIM2-215	ENST00000456545	AAMDC	Q9H7C9	122 aa		13.04	□□□□□ -0.32
PDLIM2-215	ENST00000456545	TRBV19	A0A075B6N1	114 aa		13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	TRAV12-2	A0A075B6T6	113 aa		13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	C11orf94	C9JXX5	98 aa		13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	ZNF253	O75346	499 aa		13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	GIP	P09681	153 aa	Predicted RBP	13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	C2CD4C	Q8TF44	421 aa		13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	PAXX	Q9BUH6	204 aa		13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	SLC25A2	Q9BXI2	301 aa		13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	FUT9	Q9Y231	359 aa		13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	PRELID1	Q9Y255	219 aa		13.03	□□□□□ -0.32
PDLIM2-215	ENST00000456545	KMT2C	Q8NEZ4	4911 aa	Known RBP	13.02	□□□□□ -0.32
PDLIM2-215	ENST00000456545	OR7C2	O60412	319 aa		13.02	□□□□□ -0.33
PDLIM2-215	ENST00000456545	NBEAP1	P0C6P0	100 aa		13.02	□□□□□ -0.33
PDLIM2-215	ENST00000456545	SPART-AS1	P0CW21	52 aa		13.02	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms