RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 GBGT1Q8N5D6 347 aa8.66□□□□□ -1.02
SCN9A-204ENST00000452182 OR51M1Q9H341 326 aa8.66□□□□□ -1.02
SCN9A-204ENST00000452182 SORL1Q92673 2214 aa8.66□□□□□ -1.02
SCN9A-204ENST00000452182 OR7C2O60412 319 aa8.65□□□□□ -1.02
SCN9A-204ENST00000452182 SULT1A2P50226 295 aa8.65□□□□□ -1.02
SCN9A-204ENST00000452182 CMC4P56277 68 aaPredicted RBP8.65□□□□□ -1.02
SCN9A-204ENST00000452182 PDE6HQ13956 83 aa8.65□□□□□ -1.02
SCN9A-204ENST00000452182 ZNF726P1Q15940 193 aa8.65□□□□□ -1.02
SCN9A-204ENST00000452182 LCN15Q6UWW0 184 aa8.65□□□□□ -1.02
SCN9A-204ENST00000452182 FXYD5Q96DB9 178 aa8.65□□□□□ -1.02
SCN9A-204ENST00000452182 ZNF503Q96F45 646 aa8.65□□□□□ -1.02
SCN9A-204ENST00000452182 PAXXQ9BUH6 204 aa8.65□□□□□ -1.02
SCN9A-204ENST00000452182 NBEAL1Q6ZS30 2694 aa8.65□□□□□ -1.02
SCN9A-204ENST00000452182 H3BQ15 152 aa8.65□□□□□ -1.03
SCN9A-204ENST00000452182 ISLRO14498 428 aa8.65□□□□□ -1.03
SCN9A-204ENST00000452182 ZNF253O75346 499 aa8.65□□□□□ -1.03
SCN9A-204ENST00000452182 PYYP10082 97 aa8.65□□□□□ -1.03
SCN9A-204ENST00000452182 PSMB3P49720 205 aa8.65□□□□□ -1.03
SCN9A-204ENST00000452182 GTSCR1Q86UQ5 136 aa8.65□□□□□ -1.03
SCN9A-204ENST00000452182 RNF141Q8WVD5 230 aa8.65□□□□□ -1.03
SCN9A-204ENST00000452182 SAT2Q96F10 170 aaPredicted RBP8.65□□□□□ -1.03
SCN9A-204ENST00000452182 TRBV19A0A075B6N1 114 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 CXorf1O96002 111 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 NBEAP1P0C6P0 100 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 ID1P41134 155 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 TFPI2P48307 235 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 FHITP49789 147 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 SSX7Q7RTT5 188 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 WFDC3Q8IUB2 231 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 SUN5Q8TC36 379 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 MBD3L1Q8WWY6 194 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 SLC50A1Q9BRV3 221 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 ZNF586Q9NXT0 402 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 CLEC5AQ9NY25 188 aa8.64□□□□□ -1.03
SCN9A-204ENST00000452182 CD7P09564 240 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 ARL14EPLP0DKL9 152 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 CD81P60033 236 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 SNRPD3P62318 126 aaKnown RBP8.63□□□□□ -1.03
SCN9A-204ENST00000452182 UBE2L3P68036 154 aaKnown RBP8.63□□□□□ -1.03
SCN9A-204ENST00000452182 ODF3L2Q3SX64 289 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 ALKAL2Q6UX46 152 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 FAM24BQ8N5W8 94 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 FAM213BQ8TBF2 198 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 ANAPC16Q96DE5 110 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 C16orf92Q96LL3 132 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 ZNF331Q9NQX6 463 aaPredicted RBP8.63□□□□□ -1.03
SCN9A-204ENST00000452182 C19orf73Q9NVV2 129 aa8.63□□□□□ -1.03
SCN9A-204ENST00000452182 MAP1LC3B2A6NCE7 125 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 HMGB3O15347 200 aaKnown RBP8.62□□□□□ -1.03
SCN9A-204ENST00000452182 EIF3GO75821 320 aaKnown RBP eCLIP8.62□□□□□ -1.03
SCN9A-204ENST00000452182 NDUFB4O95168 129 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 OR10J4P0C629 311 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 GCHFRP30047 84 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 PSG9Q00887 426 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 TEX261Q6UWH6 196 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 Q8N1Y9 231 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 PRR25Q96S07 402 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 MAP1LC3BQ9GZQ8 125 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 MAP6D1Q9H9H5 199 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 TMEM167BQ9NRX6 74 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 NOTCH1P46531 2555 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 TRAV8-2A0A0B4J237 113 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 TRAV1-1A0A0B4J248 108 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 OR11H12B2RN74 326 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 H2AFB1P0C5Y9 115 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 ZNF688P0C7X2 276 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 FAM74A1Q5RGS3 127 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 LYPD1Q8N2G4 141 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 LRRC20Q8TCA0 184 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 SFT2D1Q8WV19 159 aa8.62□□□□□ -1.03
SCN9A-204ENST00000452182 SLC17A3O00476 420 aa8.61□□□□□ -1.03
SCN9A-204ENST00000452182 SNRPCP09234 159 aaKnown RBP8.61□□□□□ -1.03
SCN9A-204ENST00000452182 BLNKQ8WV28 456 aa8.61□□□□□ -1.03
SCN9A-204ENST00000452182 AURKAIP1Q9NWT8 199 aaPredicted RBP8.61□□□□□ -1.03
SCN9A-204ENST00000452182 A8MZ25 164 aa8.6□□□□□ -1.03
SCN9A-204ENST00000452182 H3BTX0 84 aa8.6□□□□□ -1.03
SCN9A-204ENST00000452182 IFNA7P01567 189 aa8.6□□□□□ -1.03
SCN9A-204ENST00000452182 DEFB131AP59861 70 aa8.6□□□□□ -1.03
SCN9A-204ENST00000452182 PSMG4Q5JS54 123 aa8.6□□□□□ -1.03
SCN9A-204ENST00000452182 ZNF680Q8NEM1 530 aa8.6□□□□□ -1.03
SCN9A-204ENST00000452182 MRPL53Q96EL3 112 aaKnown RBP8.6□□□□□ -1.03
SCN9A-204ENST00000452182 UBQLN2Q9UHD9 624 aa8.6□□□□□ -1.03
SCN9A-204ENST00000452182 PRELID1Q9Y255 219 aa8.6□□□□□ -1.03
SCN9A-204ENST00000452182 ZNF705EA8MWA4 302 aaPredicted RBP8.59□□□□□ -1.03
SCN9A-204ENST00000452182 TEX46H3BTG2 121 aa8.59□□□□□ -1.03
SCN9A-204ENST00000452182 FGF8P55075 233 aaPredicted RBP8.59□□□□□ -1.03
SCN9A-204ENST00000452182 BLOC1S1P78537 153 aa8.59□□□□□ -1.03
SCN9A-204ENST00000452182 PSG3Q16557 428 aa8.59□□□□□ -1.03
SCN9A-204ENST00000452182 C20orf173Q96LM9 149 aa8.59□□□□□ -1.03
SCN9A-204ENST00000452182 LINC00052Q96N35 136 aa8.59□□□□□ -1.03
SCN9A-204ENST00000452182 AAMDCQ9H7C9 122 aa8.59□□□□□ -1.03
SCN9A-204ENST00000452182 A0A1W2PRE2 83 aa8.58□□□□□ -1.04
SCN9A-204ENST00000452182 HBE1P02100 147 aa8.58□□□□□ -1.04
SCN9A-204ENST00000452182 RANP62826 216 aaKnown RBP8.58□□□□□ -1.04
SCN9A-204ENST00000452182 LCE2AQ5TA79 106 aaPredicted RBP8.58□□□□□ -1.04
SCN9A-204ENST00000452182 IGFL4Q6B9Z1 124 aa8.58□□□□□ -1.04
SCN9A-204ENST00000452182 RNF182Q8N6D2 247 aa8.58□□□□□ -1.04
SCN9A-204ENST00000452182 Q9H3A6 140 aa8.58□□□□□ -1.04
SCN9A-204ENST00000452182 TMPRSS5Q9H3S3 457 aa8.58□□□□□ -1.04
SCN9A-204ENST00000452182 ARL2-SNX15V9GYD0 113 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms