RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 DNAH6Q9C0G6 4158 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 PRSS29PA6NIE9 313 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 F6UB75 175 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 H3BP45 60 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 H3BRN7 92 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 BOLA2-SMG1P6H3BVE0 249 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 SSSCA1O60232 199 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 LINC00869P0C866 280 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 MED14OSP0DP75 135 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 TAS2R60P59551 318 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 DEFB1P60022 68 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 ZNF846Q147U1 533 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 PSG3Q16557 428 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 GUK1Q16774 197 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 IAH1Q2TAA2 248 aaPredicted RBP5.03□□□□□ -1.6
VPS41-208ENST00000448833 LCN15Q6UWW0 184 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 AMTNQ6UX39 209 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 BPIFA4PQ86YQ2 179 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 OR11H7Q8NGC8 314 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 C16orf74Q96GX8 76 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 FAM210AQ96ND0 272 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 LINC01587Q99440 93 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 KRTAP4-12Q9BQ66 201 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 SLC50A1Q9BRV3 221 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 SRRQ9GZT4 340 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 ARL6Q9H0F7 186 aa5.03□□□□□ -1.6
VPS41-208ENST00000448833 NACAE9PAV3 2078 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 CBY3A6NI87 242 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 L7N2F9 121 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 M0R2N4 97 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 ATP5G1P05496 136 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 CXCL3P19876 107 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 PVALBP20472 110 aaPredicted RBP5.02□□□□□ -1.61
VPS41-208ENST00000448833 GATA2P23769 480 aaPredicted RBP5.02□□□□□ -1.61
VPS41-208ENST00000448833 CDKN1BP46527 198 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 ATP5G3P48201 142 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 CCL18P55774 89 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 VAMP2P63027 116 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 SPINK13Q1W4C9 94 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 C1orf134Q5TEV5 83 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 CFAP161Q6P656 301 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 TMEM14EPQ6UXP3 125 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 Q6ZRG5 221 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 CCDC28AQ8IWP9 274 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 C12orf45Q8N5I9 185 aaPredicted RBP5.02□□□□□ -1.61
VPS41-208ENST00000448833 OR8A1Q8NGG7 326 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 OR10J6PQ8NGY7 276 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 MITD1Q8WV92 249 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 C20orf173Q96LM9 149 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 SCRT1Q9BWW7 348 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 ARV1Q9H2C2 271 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 GSKIPQ9P0R6 139 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 TIMM8BQ9Y5J9 83 aaPredicted RBP5.02□□□□□ -1.61
VPS41-208ENST00000448833 PXMP4Q9Y6I8 212 aa5.02□□□□□ -1.61
VPS41-208ENST00000448833 DNAH10Q8IVF4 4471 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 HECTD4Q9Y4D8 3996 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 TRAV8-2A0A0B4J237 113 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 PMS2P5A8MQ11 134 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 PRSS47A8MTI9 375 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 H7BYZ3 331 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 M0R2Z0 102 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 CRXO43186 299 aaPredicted RBP5.01□□□□□ -1.61
VPS41-208ENST00000448833 COX7A2P2O60397 106 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 METTL15P1P0C7V9 234 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 DEFB130BP0DP73 79 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 DEFB130AP0DP74 79 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 RRAS2P62070 204 aaPredicted RBP5.01□□□□□ -1.61
VPS41-208ENST00000448833 HIST1H1AQ02539 215 aaPredicted RBP5.01□□□□□ -1.61
VPS41-208ENST00000448833 C10orf113Q5VZT2 155 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 TMEM88Q6PEY1 159 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 TMEM182Q6ZP80 229 aaPredicted RBP5.01□□□□□ -1.61
VPS41-208ENST00000448833 Q6ZR54 194 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 LINC00305Q7Z4B0 112 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 RNF182Q8N6D2 247 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 ZBTB8BQ8NAP8 495 aaPredicted RBP5.01□□□□□ -1.61
VPS41-208ENST00000448833 OR1L4Q8NGR5 311 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 CHAC2Q8WUX2 184 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 RPUSD4Q96CM3 377 aaKnown RBP5.01□□□□□ -1.61
VPS41-208ENST00000448833 PFDN5Q99471 154 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 SSBP4Q9BWG4 385 aaPredicted RBP5.01□□□□□ -1.61
VPS41-208ENST00000448833 C20orf85Q9H1P6 137 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 DNAJC4Q9NNZ3 241 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 NDUFA13Q9P0J0 144 aa5.01□□□□□ -1.61
VPS41-208ENST00000448833 MUC4Q99102 2169 aa5□□□□□ -1.61
VPS41-208ENST00000448833 C7orf66A4D0T2 115 aa5□□□□□ -1.61
VPS41-208ENST00000448833 ZNF705GA8MUZ8 300 aaPredicted RBP5□□□□□ -1.61
VPS41-208ENST00000448833 F5H768 121 aa5□□□□□ -1.61
VPS41-208ENST00000448833 AGPAT2O15120 278 aa5□□□□□ -1.61
VPS41-208ENST00000448833 RTL8CO15255 209 aa5□□□□□ -1.61
VPS41-208ENST00000448833 HBG1P69891 147 aa5□□□□□ -1.61
VPS41-208ENST00000448833 HBG2P69892 147 aa5□□□□□ -1.61
VPS41-208ENST00000448833 BAK1Q16611 211 aa5□□□□□ -1.61
VPS41-208ENST00000448833 IGFL4Q6B9Z1 124 aa5□□□□□ -1.61
VPS41-208ENST00000448833 MZT2BQ6NZ67 158 aa5□□□□□ -1.61
VPS41-208ENST00000448833 TMEM263Q8WUH6 116 aaKnown RBP5□□□□□ -1.61
VPS41-208ENST00000448833 ZNF503Q96F45 646 aa5□□□□□ -1.61
VPS41-208ENST00000448833 C17orf77Q96MU5 243 aa5□□□□□ -1.61
VPS41-208ENST00000448833 UHRF2Q96PU4 802 aa5□□□□□ -1.61
VPS41-208ENST00000448833 RBM38Q9H0Z9 239 aaKnown RBP5□□□□□ -1.61
VPS41-208ENST00000448833 ZNF331Q9NQX6 463 aaPredicted RBP5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 3229.4 ms