RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CGB3P0DN86 165 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 CGB7P0DN87 165 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 MIAQ16674 131 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 Q6ZR03 302 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 C15orf56Q8N910 161 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 ELSPBP1Q96BH3 223 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 LINC00846Q9NV44 126 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 HS3ST2Q9Y278 367 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 LINC00588Q9Y4M8 146 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 YLPM1P49750 1951 aaKnown RBP1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 DOCK8Q8NF50 2099 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 USP9YO00507 2555 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 ADGRB1O14514 1584 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 NOTCH3Q9UM47 2321 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 A0A096LNJ9 63 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 SOD1P00441 154 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 RPL22P35268 128 aaKnown RBP1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF181Q2M3W8 571 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 LDLRAD2Q5SZI1 272 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 C22orf39Q6P5X5 142 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 HAGHLQ6PII5 290 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 SCIMPQ6UWF3 145 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 Q9H521 79 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 RNF122Q9H9V4 155 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 CCDC167Q9P0B6 97 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 DSPPQ9NZW4 1301 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 LOXHD1Q8IVV2 1947 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 COL2A1P02458 1487 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 IGSF10Q6WRI0 2623 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 A0A0J9YW62 118 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 C7orf66A4D0T2 115 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 PINLYPA6NC86 204 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 CORTO00230 105 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 LECT2O14960 151 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF883P0CG24 379 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF705BP0CI00 300 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 IGHV3-30-3P0DP02 117 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 HLA-EP13747 358 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 LGALS9BQ3B8N2 356 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 LGALS9CQ6DKI2 356 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 LYG1Q8N1E2 194 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 SIGLECL1Q8N7X8 197 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 COPS9Q8WXC6 57 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 C11orf1Q9H5F2 150 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF835Q9Y2P0 537 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 PCNX3Q9H6A9 2034 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 EP300Q09472 2414 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF646O15015 1829 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 ABCC6O95255 1503 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 A0A0D9SG52 128 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 A0A1W2PQD3 144 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 CDC42EP2O14613 210 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 CCL3P10147 92 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 NFYAP23511 347 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 ZFP2Q6ZN57 461 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 SDIM1Q6ZPB5 146 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 C3orf62Q6ZUJ4 267 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 LINC00471Q8N535 108 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 KCNRGQ8N5I3 272 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 OR5A2Q8NGI9 324 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 OR5D14Q8NGL3 314 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 CIB3Q96Q77 187 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 COA4Q9NYJ1 87 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 QRICH2Q9H0J4 1663 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 TROQ12816 1431 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 TNS3Q68CZ2 1445 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 IQGAP3Q86VI3 1631 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 ADAMTSL1Q8N6G6 1762 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 IGLV4-69A0A075B6H9 119 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 IGLV3-10A0A075B6K4 115 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 IGKV6D-41A0A0C4DH26 115 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 TMEM218A2RU14 115 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 C9orf170A2RU37 121 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 MSMBP08118 114 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 TPT1P13693 172 aaKnown RBP1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 GNG4P50150 75 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 RELAQ04206 551 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 GLIPR1L1Q6UWM5 242 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 SOSTDC1Q6X4U4 206 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 Q6ZQT7 251 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 AAED1Q7RTV5 226 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 ADM2Q7Z4H4 148 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 LHFPL1Q86WI0 220 aa1.57□□□□□ -2.16
CCDC88A-208ENST00000444458 TAF1LQ8IZX4 1826 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 USP54Q70EL1 1684 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 TRPM7Q96QT4 1865 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 CDC42BPBQ9Y5S2 1711 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 A0A0G2JMM0 328 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 TRBV27A0A0K0K1C4 114 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 A0A1W2PPB8 328 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 KIR3DP1A8MWS1 328 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 M0R143 59 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF728P0DKX0 622 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 HIST1H1BP16401 226 aaKnown RBP1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 PSMB8P28062 276 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 RNF5Q99942 180 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 SMDT1Q9H4I9 107 aa1.56□□□□□ -2.16
CCDC88A-208ENST00000444458 LINC00574Q9H8X3 128 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms