RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 UBE2L3P68036 154 aaKnown RBP11.81□□□□□ -0.52
USP40-206ENST00000443711 LCN15Q6UWW0 184 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 SSX7Q7RTT5 188 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 MBD3L1Q8WWY6 194 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 ZNF503Q96F45 646 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 C16orf92Q96LL3 132 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 C17orf77Q96MU5 243 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 ZNF586Q9NXT0 402 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 MAP1LC3B2A6NCE7 125 aa11.8□□□□□ -0.52
USP40-206ENST00000443711 ISLRO14498 428 aa11.8□□□□□ -0.52
USP40-206ENST00000443711 SNRPCP09234 159 aaKnown RBP11.8□□□□□ -0.52
USP40-206ENST00000443711 H2AFB1P0C5Y9 115 aa11.8□□□□□ -0.52
USP40-206ENST00000443711 OR10J4P0C629 311 aa11.8□□□□□ -0.52
USP40-206ENST00000443711 FAM74A1Q5RGS3 127 aa11.8□□□□□ -0.52
USP40-206ENST00000443711 GTSCR1Q86UQ5 136 aa11.8□□□□□ -0.52
USP40-206ENST00000443711 FXYD5Q96DB9 178 aa11.8□□□□□ -0.52
USP40-206ENST00000443711 MAP1LC3BQ9GZQ8 125 aa11.8□□□□□ -0.52
USP40-206ENST00000443711 TRBV19A0A075B6N1 114 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 H3BTX0 84 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 SOCS3O14543 225 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 ZNF253O75346 499 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 GCHFRP30047 84 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 PSMB3P49720 205 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 CD81P60033 236 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 SNRPD3P62318 126 aaKnown RBP11.79□□□□□ -0.52
USP40-206ENST00000443711 PDE6HQ13956 83 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 TEX261Q6UWH6 196 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 SFT2D1Q8WV19 159 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 BLNKQ8WV28 456 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 SAT2Q96F10 170 aaPredicted RBP11.79□□□□□ -0.52
USP40-206ENST00000443711 PRR25Q96S07 402 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 SLC50A1Q9BRV3 221 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 TMEM167BQ9NRX6 74 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 NOTCH1P46531 2555 aa11.79□□□□□ -0.52
USP40-206ENST00000443711 ZNF705EA8MWA4 302 aaPredicted RBP11.78□□□□□ -0.52
USP40-206ENST00000443711 IFNA7P01567 189 aa11.78□□□□□ -0.52
USP40-206ENST00000443711 CD7P09564 240 aa11.78□□□□□ -0.52
USP40-206ENST00000443711 FGF8P55075 233 aaPredicted RBP11.78□□□□□ -0.52
USP40-206ENST00000443711 PSG9Q00887 426 aa11.78□□□□□ -0.52
USP40-206ENST00000443711 IQCF2Q8IXL9 164 aa11.78□□□□□ -0.52
USP40-206ENST00000443711 FAM110AQ9BQ89 295 aa11.78□□□□□ -0.52
USP40-206ENST00000443711 ZNF331Q9NQX6 463 aaPredicted RBP11.78□□□□□ -0.52
USP40-206ENST00000443711 CLEC5AQ9NY25 188 aa11.78□□□□□ -0.52
USP40-206ENST00000443711 NBEAL1Q6ZS30 2694 aa11.78□□□□□ -0.52
USP40-206ENST00000443711 TEX46H3BTG2 121 aa11.77□□□□□ -0.53
USP40-206ENST00000443711 ZNF688P0C7X2 276 aa11.77□□□□□ -0.53
USP40-206ENST00000443711 BLOC1S1P78537 153 aa11.77□□□□□ -0.53
USP40-206ENST00000443711 FAM24BQ8N5W8 94 aa11.77□□□□□ -0.53
USP40-206ENST00000443711 ZNF680Q8NEM1 530 aa11.77□□□□□ -0.53
USP40-206ENST00000443711 SUN5Q8TC36 379 aa11.77□□□□□ -0.53
USP40-206ENST00000443711 LINC00052Q96N35 136 aa11.77□□□□□ -0.53
USP40-206ENST00000443711 MAP6D1Q9H9H5 199 aa11.77□□□□□ -0.53
USP40-206ENST00000443711 TRAV8-2A0A0B4J237 113 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 TRAV1-1A0A0B4J248 108 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 OR11H12B2RN74 326 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 SLC17A3O00476 420 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 NDUFB4O95168 129 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 HBE1P02100 147 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 DEFB131AP59861 70 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 ODF3L2Q3SX64 289 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 PSMG4Q5JS54 123 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 LYPD1Q8N2G4 141 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 AAMDCQ9H7C9 122 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 UBQLN2Q9UHD9 624 aa11.76□□□□□ -0.53
USP40-206ENST00000443711 RANP62826 216 aaKnown RBP11.75□□□□□ -0.53
USP40-206ENST00000443711 PSG3Q16557 428 aa11.75□□□□□ -0.53
USP40-206ENST00000443711 IGFL4Q6B9Z1 124 aa11.75□□□□□ -0.53
USP40-206ENST00000443711 Q8N1Y9 231 aa11.75□□□□□ -0.53
USP40-206ENST00000443711 TMPRSS5Q9H3S3 457 aa11.75□□□□□ -0.53
USP40-206ENST00000443711 C19orf73Q9NVV2 129 aa11.75□□□□□ -0.53
USP40-206ENST00000443711 PRELID1Q9Y255 219 aa11.75□□□□□ -0.53
USP40-206ENST00000443711 A0A1B0GV50 99 aa11.74□□□□□ -0.53
USP40-206ENST00000443711 RNF182Q8N6D2 247 aa11.74□□□□□ -0.53
USP40-206ENST00000443711 C20orf173Q96LM9 149 aa11.74□□□□□ -0.53
USP40-206ENST00000443711 HLA-DMBP28068 263 aa11.73□□□□□ -0.53
USP40-206ENST00000443711 PPT1P50897 306 aa11.73□□□□□ -0.53
USP40-206ENST00000443711 ICAM4Q14773 271 aa11.73□□□□□ -0.53
USP40-206ENST00000443711 ZNF738Q8NE65 137 aa11.73□□□□□ -0.53
USP40-206ENST00000443711 Q9H3A6 140 aa11.73□□□□□ -0.53
USP40-206ENST00000443711 OTORQ9NRC9 128 aa11.73□□□□□ -0.53
USP40-206ENST00000443711 AURKAIP1Q9NWT8 199 aaPredicted RBP11.73□□□□□ -0.53
USP40-206ENST00000443711 A0A1W2PRE2 83 aa11.72□□□□□ -0.53
USP40-206ENST00000443711 PGPA6NDG6 321 aa11.72□□□□□ -0.53
USP40-206ENST00000443711 APRG1Q8IVJ8 170 aa11.72□□□□□ -0.53
USP40-206ENST00000443711 EXOC3-AS1Q8N2X6 119 aa11.72□□□□□ -0.53
USP40-206ENST00000443711 DEFB125Q8N687 156 aa11.72□□□□□ -0.53
USP40-206ENST00000443711 MRPL53Q96EL3 112 aaKnown RBP11.72□□□□□ -0.53
USP40-206ENST00000443711 PRB2P02812 416 aaPredicted RBP11.71□□□□□ -0.53
USP40-206ENST00000443711 CCL20P78556 96 aa11.71□□□□□ -0.53
USP40-206ENST00000443711 RPUSD4Q96CM3 377 aaKnown RBP11.71□□□□□ -0.53
USP40-206ENST00000443711 WFDC10AQ9H1F0 79 aa11.71□□□□□ -0.53
USP40-206ENST00000443711 ZNF705FA8MVS1 300 aaPredicted RBP11.7□□□□□ -0.54
USP40-206ENST00000443711 CSN1S1P47710 185 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 UBE2G2P60604 165 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 ZNF124Q15973 351 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 EBLN2Q6P2I7 272 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 FOXI2Q6ZQN5 318 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 ZNF767PQ75MW2 155 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 CMTM2Q8TAZ6 248 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 RXFP4Q8TDU9 374 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms