RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 RFNGQ9Y644 331 aa13.64□□□□□ -0.23
SHH-204ENST00000441114 A0A0J9YWU9 116 aa13.63□□□□□ -0.23
SHH-204ENST00000441114 FFAR4Q5NUL3 377 aa13.63□□□□□ -0.23
SHH-204ENST00000441114 SPATA31B1PQ5VZV4 182 aa13.63□□□□□ -0.23
SHH-204ENST00000441114 OR11H2Q8NH07 326 aa13.63□□□□□ -0.23
SHH-204ENST00000441114 A0A0J9YX75 114 aa13.62□□□□□ -0.23
SHH-204ENST00000441114 H3BQ15 152 aa13.62□□□□□ -0.23
SHH-204ENST00000441114 ZNF705DP0CH99 300 aaPredicted RBP13.62□□□□□ -0.23
SHH-204ENST00000441114 ZNF705BP0CI00 300 aaPredicted RBP13.62□□□□□ -0.23
SHH-204ENST00000441114 NUTF2P61970 127 aaKnown RBP13.62□□□□□ -0.23
SHH-204ENST00000441114 LCN15Q6UWW0 184 aa13.62□□□□□ -0.23
SHH-204ENST00000441114 MIR17HGQ75NE6 70 aa13.62□□□□□ -0.23
SHH-204ENST00000441114 AQP10Q96PS8 301 aa13.62□□□□□ -0.23
SHH-204ENST00000441114 XCL2Q9UBD3 114 aa13.62□□□□□ -0.23
SHH-204ENST00000441114 SLC17A3O00476 420 aa13.61□□□□□ -0.23
SHH-204ENST00000441114 IGLC2P0DOY2 106 aa13.61□□□□□ -0.23
SHH-204ENST00000441114 PSG3Q16557 428 aa13.61□□□□□ -0.23
SHH-204ENST00000441114 TMEM41BQ5BJD5 291 aa13.61□□□□□ -0.23
SHH-204ENST00000441114 ZFAND6Q6FIF0 208 aa13.61□□□□□ -0.23
SHH-204ENST00000441114 INO80EQ8NBZ0 244 aaPredicted RBP13.61□□□□□ -0.23
SHH-204ENST00000441114 SMLR1H3BR10 107 aa13.6□□□□□ -0.23
SHH-204ENST00000441114 PYYP10082 97 aa13.6□□□□□ -0.23
SHH-204ENST00000441114 CXCL2P19875 107 aa13.6□□□□□ -0.23
SHH-204ENST00000441114 SLC50A1Q9BRV3 221 aa13.6□□□□□ -0.23
SHH-204ENST00000441114 PARD6GQ9BYG4 376 aaPredicted RBP13.6□□□□□ -0.23
SHH-204ENST00000441114 SLC35B3Q9H1N7 401 aa13.6□□□□□ -0.23
SHH-204ENST00000441114 HRH4Q9H3N8 390 aa13.6□□□□□ -0.23
SHH-204ENST00000441114 ZNF331Q9NQX6 463 aaPredicted RBP13.6□□□□□ -0.23
SHH-204ENST00000441114 ZNF586Q9NXT0 402 aa13.6□□□□□ -0.23
SHH-204ENST00000441114 STAB2Q8WWQ8 2551 aa13.59□□□□□ -0.23
SHH-204ENST00000441114 C3orf84H3BNL1 204 aa13.59□□□□□ -0.23
SHH-204ENST00000441114 PSG9Q00887 426 aa13.59□□□□□ -0.23
SHH-204ENST00000441114 BLNKQ8WV28 456 aa13.59□□□□□ -0.23
SHH-204ENST00000441114 SLC25A2Q9BXI2 301 aa13.59□□□□□ -0.23
SHH-204ENST00000441114 C1QTNF4Q9BXJ3 329 aa13.59□□□□□ -0.23
SHH-204ENST00000441114 MFFQ9GZY8 342 aa13.59□□□□□ -0.23
SHH-204ENST00000441114 ZNF705FA8MVS1 300 aaPredicted RBP13.58□□□□□ -0.24
SHH-204ENST00000441114 DEFB4AO15263 64 aa13.58□□□□□ -0.24
SHH-204ENST00000441114 DUSP14O95147 198 aaKnown RBP13.58□□□□□ -0.24
SHH-204ENST00000441114 CNN1P51911 297 aaKnown RBP13.58□□□□□ -0.24
SHH-204ENST00000441114 HIST1H1AQ02539 215 aaPredicted RBP13.58□□□□□ -0.24
SHH-204ENST00000441114 ZNF266Q14584 549 aa13.58□□□□□ -0.24
SHH-204ENST00000441114 HSD17B11Q8NBQ5 300 aa13.58□□□□□ -0.24
SHH-204ENST00000441114 RPUSD4Q96CM3 377 aaKnown RBP13.58□□□□□ -0.24
SHH-204ENST00000441114 MRPL32Q9BYC8 188 aaKnown RBP13.58□□□□□ -0.24
SHH-204ENST00000441114 TMEM14CQ9P0S9 112 aa13.58□□□□□ -0.24
SHH-204ENST00000441114 TNFSF18Q9UNG2 199 aa13.58□□□□□ -0.24
SHH-204ENST00000441114 FUT9Q9Y231 359 aa13.58□□□□□ -0.24
SHH-204ENST00000441114 RNF222A6NCQ9 220 aa13.57□□□□□ -0.24
SHH-204ENST00000441114 G3V3Q6 166 aa13.57□□□□□ -0.24
SHH-204ENST00000441114 EIF3GO75821 320 aaKnown RBP eCLIP13.57□□□□□ -0.24
SHH-204ENST00000441114 HIST1H1EP10412 219 aaKnown RBP13.57□□□□□ -0.24
SHH-204ENST00000441114 RHOBP62745 196 aa13.57□□□□□ -0.24
SHH-204ENST00000441114 GUK1Q16774 197 aa13.57□□□□□ -0.24
SHH-204ENST00000441114 CSNK1G2-AS1Q8NCQ2 148 aa13.57□□□□□ -0.24
SHH-204ENST00000441114 SAT2Q96F10 170 aaPredicted RBP13.57□□□□□ -0.24
SHH-204ENST00000441114 FAM167A-AS1Q96KT0 104 aa13.57□□□□□ -0.24
SHH-204ENST00000441114 TIMM9Q9Y5J7 89 aa13.57□□□□□ -0.24
SHH-204ENST00000441114 ARPC5O15511 151 aa13.56□□□□□ -0.24
SHH-204ENST00000441114 ACOT6Q3I5F7 207 aaPredicted RBP13.56□□□□□ -0.24
SHH-204ENST00000441114 OR8A1Q8NGG7 326 aa13.56□□□□□ -0.24
SHH-204ENST00000441114 CLUHP3Q96NS8 147 aa13.56□□□□□ -0.24
SHH-204ENST00000441114 OR51M1Q9H341 326 aa13.56□□□□□ -0.24
SHH-204ENST00000441114 PPP1R14DQ9NXH3 145 aa13.56□□□□□ -0.24
SHH-204ENST00000441114 TRBV19A0A075B6N1 114 aa13.55□□□□□ -0.24
SHH-204ENST00000441114 IGHV3OR16-12A0A075B7B8 117 aa13.55□□□□□ -0.24
SHH-204ENST00000441114 OR7C2O60412 319 aa13.55□□□□□ -0.24
SHH-204ENST00000441114 OR10J4P0C629 311 aa13.55□□□□□ -0.24
SHH-204ENST00000441114 CASC10Q5T4H9 136 aa13.55□□□□□ -0.24
SHH-204ENST00000441114 IL17DQ8TAD2 202 aa13.55□□□□□ -0.24
SHH-204ENST00000441114 PAXXQ9BUH6 204 aa13.55□□□□□ -0.24
SHH-204ENST00000441114 PRAC2D3DTV9 90 aa13.54□□□□□ -0.24
SHH-204ENST00000441114 ATP6V0CP27449 155 aa13.54□□□□□ -0.24
SHH-204ENST00000441114 RAB2AP61019 212 aa13.54□□□□□ -0.24
SHH-204ENST00000441114 SPINK13Q1W4C9 94 aa13.54□□□□□ -0.24
SHH-204ENST00000441114 RPL7L1Q6DKI1 246 aaKnown RBP13.54□□□□□ -0.24
SHH-204ENST00000441114 FAM122CQ6P4D5 195 aa13.54□□□□□ -0.24
SHH-204ENST00000441114 AMTNQ6UX39 209 aa13.54□□□□□ -0.24
SHH-204ENST00000441114 X6R8D5 127 aa13.54□□□□□ -0.24
SHH-204ENST00000441114 BORCS7-ASMTA0A0B4J1R7 106 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 A0A1W2PPV4 95 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 M0R2Z0 102 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 NDUFB4O95168 129 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 NBEAP1P0C6P0 100 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 M6PRP20645 277 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 PMS2P11Q13670 270 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 EXOC3-AS1Q8N2X6 119 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 OR10G4Q8NGN3 311 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 OR10G9Q8NGN4 311 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 OR10G7Q8NGN6 311 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 RNF141Q8WVD5 230 aa13.53□□□□□ -0.24
SHH-204ENST00000441114 IGHV4-28A0A0C4DH34 117 aa13.52□□□□□ -0.25
SHH-204ENST00000441114 A8MTW9 85 aa13.52□□□□□ -0.25
SHH-204ENST00000441114 ZNF705EA8MWA4 302 aaPredicted RBP13.52□□□□□ -0.25
SHH-204ENST00000441114 ZNF253O75346 499 aa13.52□□□□□ -0.25
SHH-204ENST00000441114 OR10J6PQ8NGY7 276 aa13.52□□□□□ -0.25
SHH-204ENST00000441114 FXYD5Q96DB9 178 aa13.52□□□□□ -0.25
SHH-204ENST00000441114 SH3BGRL3Q9H299 93 aa13.52□□□□□ -0.25
SHH-204ENST00000441114 M0R3E3 92 aa13.51□□□□□ -0.25
SHH-204ENST00000441114 HMGB3O15347 200 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms