RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 GIPP09681 153 aaPredicted RBP8.38□□□□□ -1.07
COL28A1-203ENST00000435823 CXCL2P19875 107 aa8.38□□□□□ -1.07
COL28A1-203ENST00000435823 SMIM3Q9BZL3 60 aa8.38□□□□□ -1.07
COL28A1-203ENST00000435823 KRTAP4-8A0A0G2JLE6 195 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 A0A0J9YWU9 116 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 MRPS12O15235 138 aaKnown RBP8.37□□□□□ -1.07
COL28A1-203ENST00000435823 C4BPBP20851 252 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 GDF5OSQ5U4N7 250 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 LCN15Q6UWW0 184 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 ZNF738Q8NE65 137 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 OR4B1Q8NGF8 309 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 OR11H2Q8NH07 326 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 SCGB1C1Q8TD33 95 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 C20orf173Q96LM9 149 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 C17orf77Q96MU5 243 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 SLC50A1Q9BRV3 221 aa8.37□□□□□ -1.07
COL28A1-203ENST00000435823 TRAV8-2A0A0B4J237 113 aa8.36□□□□□ -1.07
COL28A1-203ENST00000435823 A0A0J9YX75 114 aa8.36□□□□□ -1.07
COL28A1-203ENST00000435823 F6UB75 175 aa8.36□□□□□ -1.07
COL28A1-203ENST00000435823 IGKV3-20P01619 116 aa8.36□□□□□ -1.07
COL28A1-203ENST00000435823 DEFB1P60022 68 aa8.36□□□□□ -1.07
COL28A1-203ENST00000435823 CASC10Q5T4H9 136 aa8.36□□□□□ -1.07
COL28A1-203ENST00000435823 MORN5Q5VZ52 161 aa8.36□□□□□ -1.07
COL28A1-203ENST00000435823 ZFAND6Q6FIF0 208 aa8.36□□□□□ -1.07
COL28A1-203ENST00000435823 CLUHP3Q96NS8 147 aa8.36□□□□□ -1.07
COL28A1-203ENST00000435823 TRAV5A0A0B4J249 113 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 DUSP14O95147 198 aaKnown RBP8.35□□□□□ -1.07
COL28A1-203ENST00000435823 GIG44P09565 113 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-203ENST00000435823 PSG3Q16557 428 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 GUK1Q16774 197 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 LINC01559Q495D7 138 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 FAM78BQ5VT40 261 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 IGFL4Q6B9Z1 124 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 RNF182Q8N6D2 247 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 HRH4Q9H3N8 390 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 CLEC5AQ9NY25 188 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 XCL2Q9UBD3 114 aa8.35□□□□□ -1.07
COL28A1-203ENST00000435823 SNRPCP09234 159 aaKnown RBP8.34□□□□□ -1.07
COL28A1-203ENST00000435823 IGLC2P0DOY2 106 aa8.34□□□□□ -1.07
COL28A1-203ENST00000435823 PSG9Q00887 426 aa8.34□□□□□ -1.07
COL28A1-203ENST00000435823 GCSAMLQ5JQS6 135 aa8.34□□□□□ -1.07
COL28A1-203ENST00000435823 LINC00528Q8N1L1 170 aa8.34□□□□□ -1.07
COL28A1-203ENST00000435823 MRPL32Q9BYC8 188 aaKnown RBP8.34□□□□□ -1.07
COL28A1-203ENST00000435823 PARD6GQ9BYG4 376 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-203ENST00000435823 ZNF331Q9NQX6 463 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-203ENST00000435823 TMEM14CQ9P0S9 112 aa8.34□□□□□ -1.07
COL28A1-203ENST00000435823 H3BTX0 84 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 MIFP14174 115 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 HLA-DMBP28068 263 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 CNN1P51911 297 aaKnown RBP8.33□□□□□ -1.08
COL28A1-203ENST00000435823 FXYD7P58549 80 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 ZNF266Q14584 549 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 FFAR4Q5NUL3 377 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 INO80EQ8NBZ0 244 aaPredicted RBP8.33□□□□□ -1.08
COL28A1-203ENST00000435823 CSNK1G2-AS1Q8NCQ2 148 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 OR2T35Q8NGX2 323 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 RPUSD4Q96CM3 377 aaKnown RBP8.33□□□□□ -1.08
COL28A1-203ENST00000435823 AQP10Q96PS8 301 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 MFFQ9GZY8 342 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 SLC35B3Q9H1N7 401 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 C11orf68Q9H3H3 251 aaKnown RBP8.33□□□□□ -1.08
COL28A1-203ENST00000435823 WFDC1Q9HC57 220 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 PPP1R14DQ9NXH3 145 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 TIMM9Q9Y5J7 89 aa8.33□□□□□ -1.08
COL28A1-203ENST00000435823 DNAH7Q8WXX0 4024 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 FXYD6-FXYD2A0A087WZ82 144 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 ZNF705EA8MWA4 302 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-203ENST00000435823 H3BQ15 152 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 ZNF253O75346 499 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 AMBPP02760 352 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 HIST1H1EP10412 219 aaKnown RBP8.32□□□□□ -1.08
COL28A1-203ENST00000435823 RHOBP62745 196 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 HIST1H1AQ02539 215 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-203ENST00000435823 Q5BKY6 102 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 MIR17HGQ75NE6 70 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 OR8A1Q8NGG7 326 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 FUT9Q9Y231 359 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 X6R8D5 127 aa8.32□□□□□ -1.08
COL28A1-203ENST00000435823 TRBV19A0A075B6N1 114 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 IGHV4-28A0A0C4DH34 117 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 CXorf65A6NEN9 183 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 A8MTW9 85 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 SLC17A3O00476 420 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 ZNF705DP0CH99 300 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-203ENST00000435823 ZNF705BP0CI00 300 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-203ENST00000435823 PYYP10082 97 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 PMS2P11Q13670 270 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 PDE6HQ13956 83 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 ACOT6Q3I5F7 207 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-203ENST00000435823 SAT2Q96F10 170 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-203ENST00000435823 SLC25A2Q9BXI2 301 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 OR51M1Q9H341 326 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 ZNF586Q9NXT0 402 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 GOLT1BQ9Y3E0 138 aa8.31□□□□□ -1.08
COL28A1-203ENST00000435823 IGHV3OR16-12A0A075B7B8 117 aa8.3□□□□□ -1.08
COL28A1-203ENST00000435823 ZNF705FA8MVS1 300 aaPredicted RBP8.3□□□□□ -1.08
COL28A1-203ENST00000435823 BOLA2-SMG1P6H3BVE0 249 aa8.3□□□□□ -1.08
COL28A1-203ENST00000435823 DEFB4AO15263 64 aa8.3□□□□□ -1.08
COL28A1-203ENST00000435823 TAS2R45P59539 299 aa8.3□□□□□ -1.08
COL28A1-203ENST00000435823 AMTNQ6UX39 209 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms