RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 FGF16O43320 207 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 FAM186AA6NE01 2351 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 TNFRSF6BO95407 300 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 GAS1P54826 345 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 PAX9P55771 341 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 B3GALT5-AS1P59052 145 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 ARMS2P0C7Q2 107 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE2AQ6NT46 116 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 RPRMLQ8N4K4 120 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 A0A096LPF7 62 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 SUMO4Q6EEV6 95 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 KLF12Q9Y4X4 402 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE12BA1L429 117 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE7O76087 117 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE12FP0CL80 117 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE12GP0CL81 117 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE12IP0CL82 117 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 RNASE2P10153 161 aaKnown RBP12.46□□□□□ -0.41
PTPRF-206ENST00000429895 NMSQ5H8A3 153 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 C8orf49Q96NF6 230 aa12.46□□□□□ -0.41
PTPRF-206ENST00000429895 ESDP10768 282 aa12.46□□□□□ -0.42
PTPRF-206ENST00000429895 LHFPL1Q86WI0 220 aa12.46□□□□□ -0.42
PTPRF-206ENST00000429895 MRAPQ8TCY5 172 aa12.46□□□□□ -0.42
PTPRF-206ENST00000429895 G3V318 75 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 TMEM126AQ9H061 195 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 PFN2P35080 140 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 TMEM14EPQ6UXP3 125 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 LY6G5BQ8NDX9 201 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 LINC00479Q96M42 142 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 NEUROG3Q9Y4Z2 214 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 NDUFS8O00217 210 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 AZU1P20160 251 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 IGHV3-38A0A0C4DH36 116 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 SNHG12Q9BXW3 62 aa12.45□□□□□ -0.42
PTPRF-206ENST00000429895 NYNRINQ9P2P1 1898 aaKnown RBP12.45□□□□□ -0.42
PTPRF-206ENST00000429895 C15orf62A8K5M9 175 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 AMBPP02760 352 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 CYTL1Q9NRR1 136 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 IGHG3P01860 377 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 PMVKQ15126 192 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 CR1LQ2VPA4 569 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 NKAPP1Q8N9T2 125 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 IGHV1-69DA0A0B4J2H0 117 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 IGHV1-69P01742 117 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 XIRP1Q702N8 1843 aaKnown RBP12.44□□□□□ -0.42
PTPRF-206ENST00000429895 TRPT1Q86TN4 253 aaKnown RBP12.44□□□□□ -0.42
PTPRF-206ENST00000429895 TRAV12-2A0A075B6T6 113 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 Q86TA4 180 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 TMEM256Q8N2U0 113 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 RASL11AQ6T310 242 aa12.44□□□□□ -0.42
PTPRF-206ENST00000429895 C17orf82Q86X59 251 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-206ENST00000429895 WDR90Q96KV7 1748 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 CRIPAKQ8N1N5 446 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 A0A1W2PPI3 338 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 K7ENP7 123 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 HIST3H2BBQ8N257 126 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 SHANK2-AS3Q9BTD1 123 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 A0A0G2JRQ6 117 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 NDUFB8O95169 186 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 UBE2E1P51965 193 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 GAGE6Q13070 117 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 LOC105371267A0A1B0GV96 52 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 GAGE2BQ13066 116 aa12.43□□□□□ -0.42
PTPRF-206ENST00000429895 CITED2Q99967 270 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-206ENST00000429895 TRBV25-1A0A075B6N4 114 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 LYPD1Q8N2G4 141 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 LINC01559Q495D7 138 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 LHBP01229 141 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 CFHR2P36980 270 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 TMEM213A2RRL7 107 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 ZC2HC1BQ5TFG8 222 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 DLX4Q92988 240 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-206ENST00000429895 J3QKU1 62 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 TMEM242Q9NWH2 141 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 TP53TG1Q9Y2A0 90 aa12.42□□□□□ -0.42
PTPRF-206ENST00000429895 INTS1Q8N201 2190 aaKnown RBP12.41□□□□□ -0.42
PTPRF-206ENST00000429895 GREB1Q4ZG55 1949 aa12.41□□□□□ -0.42
PTPRF-206ENST00000429895 NXPH4O95158 308 aa12.41□□□□□ -0.42
PTPRF-206ENST00000429895 MST1LQ2TV78 715 aa12.41□□□□□ -0.42
PTPRF-206ENST00000429895 ZFAND6Q6FIF0 208 aa12.41□□□□□ -0.42
PTPRF-206ENST00000429895 THAP8Q8NA92 274 aa12.41□□□□□ -0.42
PTPRF-206ENST00000429895 LOC285556D6RIA3 1793 aa12.41□□□□□ -0.42
PTPRF-206ENST00000429895 HS3ST6Q96QI5 342 aa12.41□□□□□ -0.42
PTPRF-206ENST00000429895 UBE2CO00762 179 aa12.41□□□□□ -0.42
PTPRF-206ENST00000429895 RALGAPA2Q2PPJ7 1873 aa12.41□□□□□ -0.42
PTPRF-206ENST00000429895 EREGO14944 169 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 GATA3P23771 443 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 DNAJC30Q96LL9 226 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 SCN5AQ14524 2016 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 SDK2Q58EX2 2172 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 E9PQ18 207 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 CLPSL2Q6UWE3 100 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 OVOL2Q9BRP0 275 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 WNK3Q9BYP7 1800 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 TRBV24-1A0A075B6N3 115 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 C3orf79P0CE67 100 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 HOXD3P31249 432 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-206ENST00000429895 ALPK2Q86TB3 2170 aa12.4□□□□□ -0.42
PTPRF-206ENST00000429895 DUX4L9Q6RFH8 374 aaPredicted RBP12.4□□□□□ -0.43
PTPRF-206ENST00000429895 TRAV25A0A0B4J276 109 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms